[BioC] Using current GO data with Bioconductor

Marc Carlson mcarlson at fhcrc.org
Wed Jul 11 18:01:35 CEST 2007


I believe that I have located the source files for gene_ontology.obo
that go with the last release of BioConductor.  This would provide you
with a matching set of source and package for GO.  If you are planning
on changing code that looks at GO, then I suspect this will do the trick
for you.  Please reply to my off list email if you would like the source
file we used and I will send it on.

    Marc


Peter Robinson wrote:
> Dear Bioconductors,
>
> we are in the process of testing new routines for GO analysis and would like to use the same version of the gene_ontology.obo file for the Bioconductor routines as well as other software. Is there any way of importing a current version of this data into Bioconductor so it can be used with the other packages?
>
> Thanks, Peter
>
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