[BioC] sam and the new version

[Holger Schwender]

Actually, I do not know anymore what works in 1.2.0 and not in 1.2.11, as these are pretty old versions which have been updated several times with many major changes. Please use the current version of siggenes, version 1.10.1.

And please let me then know if something does not work in this version.
And if yes, what does not work.

If you do not know how to specify the arguments/options in the function, please take a look in the vignette of siggenes:

> vignette("siggenes")

Almost everything is explained in this vignette (and what is not explained in the vignette is explained in the R News article mentioned -- with link -- in the vignette).

Thanks,
Holger

-------- Original-Nachricht --------
Datum: Thu, 19 Jul 2007 09:17:34 +0200 (CEST)
Von: el mousselly antra <elmousselly.antra at yahoo.fr>
An: holger.schw at gmx.de
CC: bio c bioconductor <bioconductor at stat.math.ethz.ch>
Betreff: sam and the new version

> dear schwender,
> i am using sam in siggens but i have some problems
> some functions don't work as i have the habit to use it, like
> summary(sam.out)
> sum.sam.out <- summary(sam.out, 0.4, ll = FALSE)
> sum.sam.out at mat.sig
> only function sam work well but a lot of functions  functions 
> have some problems or changes that i don'know how  but i think
>   in the version 1.2.0 in the past 
> have worked but now this new version  d'ont work  in the version 1.2.11
> i don't know what'the problem and what's  i have to do
>   thank you 
> sincerly
> 
>        
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