[BioC] affyQCReport before and after normalization

Sebastien Gerega sgerega at usyd.edu.au
Tue Jul 31 04:38:53 CEST 2007


Hi,
I would like to generate affyQCReports for before and after 
normalization of data. I can obviously generate a QCReport for an 
affyBatch object quite simply but once I have processed the affyBatch 
object as follows:
eset <- rma(affyBatch)
I am unsure about how to get a second QCReport. The rma process would 
have normalized and background corrected the affyBatch object to create 
the exprsSet but how can I access this normalized data to create another 
QCReport?
any help would be greatly appreciated. thanks,
Sebastien



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