[BioC] affyQCReport before and after normalization
Sebastien Gerega
sgerega at usyd.edu.au
Tue Jul 31 04:38:53 CEST 2007
Hi,
I would like to generate affyQCReports for before and after
normalization of data. I can obviously generate a QCReport for an
affyBatch object quite simply but once I have processed the affyBatch
object as follows:
eset <- rma(affyBatch)
I am unsure about how to get a second QCReport. The rma process would
have normalized and background corrected the affyBatch object to create
the exprsSet but how can I access this normalized data to create another
QCReport?
any help would be greatly appreciated. thanks,
Sebastien
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