[BioC] Source codes of affy, gcrma and quantiles

[Gunther Höning]

Dear list,

I'm looking for the source codes for affy,gcrma and quantiles.

Can anyone tell me where to find themn ?

Gunther

-----Ursprüngliche Nachricht-----
Von: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch] Im Auftrag von Pan Du
Gesendet: Donnerstag, 12. Juli 2007 16:39
An: William Mifsud; bioconductor at stat.math.ethz.ch
Betreff: Re: [BioC] lumiT VST error

The latest version is 1.3.16, which should be downloaded from Bioconductor
developing section:
http://www.bioconductor.org/packages/2.1/bioc/html/lumi.html

Tell me if error still exists when using the new version.


Pan


On 7/12/07 9:25 AM, "William Mifsud" <wm237 at cam.ac.uk> wrote:

>> 
>> Can you provide the sessionInfo()? Like the version of lumi you are 
>> using. I guess you are using the old version of lumi. Thanks!
> 
> It's lumi 1.2.0 - I had also got the same error with several previous 
> versions of lumi.
> 
>> sessionInfo()
> R version 2.5.0 (2007-04-23)
> i386-pc-mingw32
> 
> locale:
> LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
> Kingdom.1252;LC_MONETARY=English_United Kingdom.
> 1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
> 
> attached base packages:
> [1] "grid"      "tools"     "stats"     "graphics"  "grDevices"
> "utils"     "datasets"  "methods"   "base"
> 
> other attached packages:
> lumiMouseV1         lumi         mgcv      biomaRt
> RCurl          XML    beadarray beadarraySNP  quantsmooth      lodplot
>       "1.2.0"      "1.2.0"     "1.3-25"     "1.10.0"
> "0.8-0"      "1.9-0"      "1.4.0"      "1.2.0"      "1.2.0"        "1.1"
>      quantreg      SparseM         affy       affyio
> geneplotter      lattice     annotate      Biobase        limma
>        "4.06"       "0.72"     "1.14.1"      "1.4.0"     "1.14.0"
> "0.15-4"     "1.14.1"     "1.14.0"     "2.10.5"
> 
> 
> Thanks,
> 
> Will


---------------------------------------------------
Pan Du, PhD
Research Associate / Senior Bioinformatics Analyst Robert H. Lurie
Comprehensive Cancer Center Northwestern University
676 ST Clair St., #1200
Chicago, IL 60611
Office (312)695-4781
dupan at northwestern.edu

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