[BioC] Nimblegen chip analysis

[Benilton Carvalho]

is this an expression array and are you sure the XYS corresponds to  
the NDF you have?

b

On Jul 11, 2007, at 4:42 AM, Rene Dreos ((JIC)) wrote:

> Dear list,
> I am trying to build a Nimblegen platform package using
> makePlatformDesign. Nimblagen technical support provide me the .xys  
> file
> for this platform but when I try to build the package the software  
> give
> me this error:
>
>> makePDpackage("60merProbeSeqs.ndf", "1140102_532.xys", manufacturer =
>> "nimblegen")
> nimblegen expression
> The package will be called pd.60merprobeseqs Reading  
> 60merProbeSeqs.txt
> Assuming a simple design (NOT multiple-wells).
> Error in data.frame(X = ndfdata$X, Y = ndfdata$Y, feature_set_name =
> ndfdata$SEQ_ID,  :
>         arguments imply differing number of rows: 0, 392247 In  
> addition:
> Warning messages:
> 1: no non-missing arguments to max; returning -Inf in: max(ndfdata$X)
> 2: no non-missing arguments to max; returning -Inf in: max(ndfdata$Y)
> 3: no non-missing arguments to max; returning -Inf in: max(ndfdata$Y)
>>
>
> I check the number of lines in the .ndf, it is 372776 but the  
> number of
> lines in the .xys is 392247.
> How can I solve this problem?
> Regards
> Rene'
>
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