[BioC] exonmap/xmap database install problem

[Crispin Miller]

Hi,
I've just checked with our developer - have you installed the homo
sapiens core database (homo_sapiens_core_45_36g) from Ensembl, first?

Crispin



> -----Original Message-----
> From: bioconductor-bounces at stat.math.ethz.ch 
> [mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of 
> Johannes Rainer
> Sent: 05 July 2007 06:54
> To: bioconductor at stat.math.ethz.ch
> Subject: [BioC] exonmap/xmap database install problem
> 
> hi,
> i just downloaded the x:map mysql database 
> (xmap_homo_sapiens_core_45_36g) and tried to install it on my 
> local computer. i first created the database, and following 
> the installation instruction i used the "create.script" to 
> create the database. but running
> 
> mysql -h localhost -u jo -p homo_sapiens_core_45_36g < create.script
> 
> resulted in the error
> ERROR 1146 (42S02) at line 95: Table
> 'homo_sapiens_core_45_36g.prediction_transcript' doesn't exist
> 
> looks like some misspelling in the create.script file?
> by the way i am running mysql 5.0.37
> 
> bests, jo
> 
> --
> Johannes Rainer, Msc
> Tyrolean Cancer Research Institute
> Innrain 66, 6020 Innsbruck, Austria
> Tel.: +43 512 570485 33
> Email: johannes.rainer at tcri.at
>           johannes.rainer at tugraz.at
> 
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