[BioC] displaying heatmap with gene names instead of Affy probes
Ruppert Valentino
ruppert7 at hotmail.com
Wed Jul 11 05:24:57 CEST 2007
Hello,
Can anyone tell me how to display heatmap with gene names instead
of Affy probes when displaying heatmap from Affy exprsSet. I looked at the
heatmap function and exprs class but I am at a loss as how to change the
name on the heatmap to Gene name instead of Affy ID.
I managed to get the geneids as follows :
geneid <- mget(geneNames(eset), envir = hgu133aSYMBOL) # get gene symbols
but would be greatful for any advice on what to do next to get heatmap with
gene names instead of Affy IDs.
Many thanks
Ruppert.
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