[BioC] read.phenoData vs read.AnnotatedDataFrame

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Hi Alice,

Johnstone, Alice wrote:
[...]
> ##Read data
> pd<-read.AnnotatedDataFrame("targets.txt",header=T,row.name="sample")

The default for the 'sep' arg is "" in BioC 2.0 (this has changed to "\t"
in recent read.AnnotatedDataFrame devel), so make sure that this is what
you have in your file or add sep="\t" to your call.

Sorry I can't help for your other questions...

Cheers,
H.