[BioC] Manufacturer ids in lumiHumanV1
Benjamin Otto
b.otto at uke.uni-hamburg.de
Thu Jul 5 13:00:14 CEST 2007
Dear bioconductors,
I just installed the lumiHumanV1 package via the biocLite() procedure
yesterday. The identifiers of the single probes look very strange to me.
Beside that they don't appear in the annotation file provided by Illumina
the name composition itself made me, let me say somehow suspicious! Here
comes a quick extract. Did someone observe that before?
> xx <- as.list(lumiHumanV1ACCNUM)
> xx[1:5]
$x00WAIBIVaMvS3EVQ0
[1] NA
$`9iFKOnl5SKK4SnkAS8`
[1] "NM_032360"
$Ke_INOf6KSdNz6Qeek
[1] "NM_030945"
$rKBxx.U0SoWkRRVxac
[1] "NM_025258"
$ilenrd0XnE.4v_3Zec
[1] NA
> sessionInfo()
R version 2.5.0 (2007-04-23)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] "tools" "stats" "graphics" "grDevices" "utils" "datasets"
[7] "methods" "base"
other attached packages:
lumiHumanV1 lumi annotate mgcv affy affyio
"1.2.0" "1.2.0" "1.14.1" "1.3-23" "1.14.0" "1.4.0"
Biobase
"1.14.0"
Cheers,
Benjamin
======================================
Benjamin Otto
University Hospital Hamburg-Eppendorf
Institute For Clinical Chemistry
Martinistr. 52
D-20246 Hamburg
Tel.: +49 40 42803 1908
Fax.: +49 40 42803 4971
======================================
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