[BioC] Manufacturer ids in lumiHumanV1

Benjamin Otto b.otto at uke.uni-hamburg.de
Thu Jul 5 13:00:14 CEST 2007


Dear bioconductors,

I just installed the lumiHumanV1 package via the biocLite() procedure
yesterday. The identifiers of the single probes look very strange to me.
Beside that they don't appear  in the annotation file provided by Illumina
the name composition itself made me, let me say somehow suspicious! Here
comes a quick extract. Did someone observe that before?

> xx <- as.list(lumiHumanV1ACCNUM)
> xx[1:5]
$x00WAIBIVaMvS3EVQ0
[1] NA

$`9iFKOnl5SKK4SnkAS8`
[1] "NM_032360"

$Ke_INOf6KSdNz6Qeek
[1] "NM_030945"

$rKBxx.U0SoWkRRVxac
[1] "NM_025258"

$ilenrd0XnE.4v_3Zec
[1] NA

> sessionInfo()
R version 2.5.0 (2007-04-23) 
i386-pc-mingw32 

locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252

attached base packages:
[1] "tools"     "stats"     "graphics"  "grDevices" "utils"     "datasets" 
[7] "methods"   "base"     

other attached packages:
lumiHumanV1        lumi    annotate        mgcv        affy      affyio 
    "1.2.0"     "1.2.0"    "1.14.1"    "1.3-23"    "1.14.0"     "1.4.0" 
    Biobase 
   "1.14.0" 



Cheers,

Benjamin


======================================
Benjamin Otto
University Hospital Hamburg-Eppendorf
Institute For Clinical Chemistry
Martinistr. 52
D-20246 Hamburg

Tel.: +49 40 42803 1908
Fax.: +49 40 42803 4971
======================================



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