[BioC] How to use KEGG in Bioconductor

John Zhang jzhang at jimmy.harvard.edu
Mon Jul 16 22:31:18 CEST 2007

>* List all KEGG pathways

>pathways <- ls(KEGGPATHNAME2ID)

>* For each KEGG pathways, give me a list of gene ids (whatever IDs that I
>can use to link to Refseq IDs or HGNC gene symbols).

for the first element of pathways for human as an example:

>geneids <- get(paste("hsa", get(pathways[1], KEGGPATHNAME2ID), sep = ""), 

>Any help will be highly appareicated.
>-- Mousheng Xu
>	[[alternative HTML version deleted]]
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Jianhua Zhang
Department of Medical Oncology
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084

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