[BioC] how to make probe environments for use with GCRMA

Wittner, Ben, Ph.D. Wittner.Ben at mgh.harvard.edu
Fri Jul 20 20:35:41 CEST 2007


I'll be getting data from a custom Affymetrix expression chip and would like to
use gcrma.
If the chip is named "foo", in order to use gcrma() I need a foocdf environment
and a fooprobe environment.
I've found the package makecdfenv that will allow me to make foocdf given the
CDF file for the chip.
Can anyone give me advice for creating the fooprobe environment?

Thanks very much.

-Ben 






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