[BioC] annotation files for agilent: a bit off-topic

Sean Davis sdavis2 at mail.nih.gov
Tue Jul 17 23:25:51 CEST 2007


Weiwei Shi wrote:
> Hi, there:
> 
> I knew this is a bit off-topic but hope someone has knowledge to share:
> 
> I found 4 zipped files about annotation from agilent:
> 
> Human 1A(v2)
> Human Genome CGH 44A
> Human Genome CGH 44B
> Human Genome, Whole
> 
> I assume I can use the last one for my arrays but w/o knowing the
> difference b/w them, I am not quite sure.

You will need to find out what platform your arrays use or do some probe
ID matching between your arrays and the annotation packages.  The former
is preferred.

Sean



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