[BioC] annotation files for agilent: a bit off-topic

[Weiwei Shi]

Thanks for all of you guys.

I approach this by using sequence info. Anyway, it works. I will try
to use others as suggested later on.

Best,

Weiwei

On 7/18/07, Gaj Stan (BIGCAT) <Stan.Gaj at bigcat.unimaas.nl> wrote:
>
>
>
> Hi there,
>
>  Another tip would be to use the barcode present on each Agilent array (or
> if you used an Agilent Scanner, it's the part of the filename between the
> first and second underscore, if I recall correctly). Visiting the Agilent
> website (chem.agilent.com) and downloading the annotation/gene file results
> in a window where it asks for this barcode. After submission the correct
> annotation files will be displayed for you to download!
>
>  For more details, I recommend visiting the Agilent website.
>
>  Best of luck,
>
>     -- Stan
>
>
>
>  -----Original Message-----
>  From: bioconductor-bounces at stat.math.ethz.ch on behalf of
> John Zhang
>  Sent: Wed 7/18/2007 16:25
>  To: bioconductor at stat.math.ethz.ch; helprhelp at gmail.com
>  Subject: Re: [BioC] annotation files for agilent: a bit off-topic
>
>
>  >
>  >I knew this is a bit off-topic but hope someone has knowledge to share:
>  >
>  >I found 4 zipped files about annotation from agilent:
>  >
>  >Human 1A(v2)
>  >Human Genome CGH 44A
>  >Human Genome CGH 44B
>  >Human Genome, Whole
>  >
>  >I assume I can use the last one for my arrays but w/o knowing the
>  >difference b/w them, I am not quite sure.
>
>  They are different platforms. You need to use the one that matches the
> array you
>  are using.
>
>
>  >
>  >thanks
>  >
>  >--
>  >Weiwei Shi, Ph.D
>  >Research Scientist
>  >GeneGO, Inc.
>  >
>  >"Did you always know?"
>  >"No, I did not. But I believed..."
>  >---Matrix III
>  >
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>
>  Jianhua Zhang
>  Department of Medical Oncology
>  Dana-Farber Cancer Institute
>  44 Binney Street
>  Boston, MA 02115-6084
>
>  _______________________________________________
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>
>


-- 
Weiwei Shi, Ph.D
Research Scientist
GeneGO, Inc.

"Did you always know?"
"No, I did not. But I believed..."
---Matrix III