[BioC] Return of "I'm sorry, I do not know about chip type (foo)"

[Dave Jacoby]

I've been trying to get a number of chips to work with the Affy modules. 
I found the
fix for simpleaffy, adding lines to the *.tab files in simplaffy/data, 
in the list archives.
  (https://stat.ethz.ch/pipermail/bioconductor/2007-February/016033.html)
Using the techniques listed, I got wheatcdf to work and have sent the 
added lines to
the maintainer.

I have added the lines for chickencdf, but I receive the "I don't know 
about chip type: chickencdf" error. I am at a loss, as I have done 
everything for chickencdf that I have for wheatcdf, with different result.

alpha.tab: "chickencdf" 0.05 0.065

qc.probes.tab: "chickencdf" "AFFX-Gga-actin-3_at" "AFFX-Gga-actin-M_at" 
"AFFX-Gga-actin-5_a_at" "AFFX-Gga-gapdh-3_a_at" "AFFX-Gga-gapdh-5_a_at" 
"AFFX-Gga-gapdh-M_a_at" "NA" "NA" "NA" "NA" "NA" "NA"
spikes.tab: "chickencdf" "AFFX-Gga-r2-Ec-bioB-3_at" 
"AFFX-Gga-r2-Ec-bioB-5_at" "AFFX-Gga-r2-Ec-bioC-3_at" 
"AFFX-Gga-r2-P1-cre-3_s_at"


attached base packages:
[1] "splines"   "tools"     "stats"     "graphics"  "grDevices" "datasets"
[7] "utils"     "methods"   "base"

other attached packages:
  chickencdf      affyPLM     affydata RColorBrewer   simpleaffy   
genefilter
    "1.16.0"     "1.12.0"     "1.11.2"      "0.2-3"    "2.10.31"     
"1.14.1"
    survival        limma        gcrma  matchprobes         affy       
affyio
      "2.31"     "2.10.5"      "2.8.1"      "1.8.1"     "1.14.2"      
"1.4.0"
     Biobase
    "1.14.0"

Thanks for any guidance you can give.

-- 
David Jacoby    jacoby at purdue.edu
  Purdue Genomics Facility
  S049, WSLR building
  Phone: hah!