June 2006 Archives by thread
Starting: Thu Jun 1 00:23:05 CEST 2006
Ending: Fri Jun 30 16:33:44 CEST 2006
Messages: 325
- [BioC] flat microarray p-values
Darren Ames
- [BioC] getBM failing on complete probe list for hgu133plus2
Obi Griffith
- [BioC] empty elements in uniprot_swissprot annotation
Obi Griffith
- [BioC] BioC2006 conference scholarship program, applications due 15 June 2006
Vincent Carey 525-2265
- [BioC] Limma contrasts questions
Gordon Smyth
- [BioC] VennDiagram quesiont in limma
Gordon Smyth
- [BioC] Differential expression
Di Wu
- [BioC] Newbie 'rflowcyt' question; problem loading facscan256.fcs
Ulrik Stervbo
- [BioC] Issue with removeNode?
Jonathan Swinton
- [BioC] Limma, dye-swaps and uneven numbers of replicate arrays
michael watson (IAH-C)
- [BioC] limma decideTests
Gordon K Smyth
- [BioC] Issue with removeNode?
Seth Falcon
- [BioC] less mappings to LocusLink in new moe430a
Manuela Hummel
- [BioC] "M vs. M" Plot
Heather Nyce
- [BioC] FW: flat microarray p-values
Darren Ames
- [BioC] flat microarray p-values
Darren Ames
- [BioC] flat microarray p-values
Darren Ames
- [BioC] rflowcyt and prada questions
Nolwenn LeMeur
- [BioC] Newbie 'rflowcyt' question; problem loading facscan256.fcs (fwd)
Nolwenn LeMeur
- [BioC] Fwd: Problem with justRMA and hgu133aplus2cdf
Sean Davis
- [BioC] Background correlation with different scanners
J.delasHeras at ed.ac.uk
- [BioC] [Bioc-devel] Appropriate linear model analysis for microarray time course comparison
Sean Davis
- [BioC] Limma, dye-swaps and uneven numbers of replicate arrays
Gordon K Smyth
- [BioC] less mappings to LocusLink in new moe430a
Nianhua Li
- [BioC] annotation data packages for plasmodium falciparum?
Paul Shannon
- [BioC] LimmaGUI for illumina data
Mark Dunning
- [BioC] limma citations [was LimmaGUI for illumina data]
Gordon Smyth
- [BioC] justGCRMA error in BioC 1.8
James W. MacDonald
- [BioC] limma: results from different coefficients
James W. MacDonald
- [BioC] question on decideTests function in limma
Gordon K Smyth
- [BioC] Rmpi installation in in IBM HCP
Seth Falcon
- [BioC] R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
Seth Falcon
- [BioC] Update getBioC for R 2.3 needed ?
Seth Falcon
- [BioC] problem with moe430a version 1.12.0?
Seth Falcon
- [BioC] Reading flag data from Agilent files
Giovanni Coppola
- [BioC] vsn on log2 transformed data?
Kamila Naxerova
- [BioC] Problems with installing packages
David Seo
- [BioC] vsn and RMA-affy ...?
Dario Greco
- [BioC] day-of-hybridisation variability
kfbargad at ehu.es
- [BioC] Problem downloading Bioconductor
Seth Falcon
- [BioC] Problems with installation of Rgraphviz
Seth Falcon
- [BioC] error message in gcrma
Mohammad Esad-Djou
- [BioC] RMA-bimodality:
noel0925 at sbcglobal.net
- [BioC] error message in gcrma
Mohammad Esad-Djou
- [BioC] error message in gcrma
Mohammad Esad-Djou
- [BioC] yeast2 LOCUSID environment
Jacob Michaelson
- [BioC] error creating new exprSet
kfbargad at ehu.es
- [BioC] R hangs when applying johnson.all.pairs.sp (in library RBGL) to some graphs
Li.Long at isb-sib.ch
- [BioC] error message in gcrma
Mohammad Esad-Djou
- [BioC] Can't find survival and splines packages - help?
Fernanda Schreiber
- [BioC] RMA-bimodality:
Peter G. Warren
- [BioC] qc and fitPLM functions in 'simpleaffy' and 'affyPLM'
Alvord, Greg (DMS) [Contr]
- [BioC] RMA-bimodality:
Phguardiol at aol.com
- [BioC] BIRD
Prof.Roland Wagner
- [BioC] Error in SSClust (Smoothing Spline Clustering)
Maurice Melancon
- [BioC] help with large Rgraphviz output
Kimpel, Mark William
- [BioC] help with large Rgraphviz output
Kimpel, Mark William
- [BioC] problem with latest version of graph
Kimpel, Mark William
- [BioC] day-of-hybridisation variability
martin.schumacher at novartis.com
- [BioC] Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
rcaloger
- [BioC] Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
Martin Morgan
- [BioC] Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
rcaloger
- [BioC] Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
James W. MacDonald
- [BioC] Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
Sean Davis
- [BioC] Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
Martin Morgan
- [BioC] [SPAM] Re: Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
rcaloger
- [BioC] [SPAM] Re: Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
Seth Falcon
- [BioC] goCluster results
TM
- [BioC] yeast2 LOCUSID environment
John Zhang
- [BioC] problem with latest version of graph
Kimpel, Mark William
- [BioC] goCluster colors
TM
- [BioC] decideTest extraction of P values
Vijay A Raghavan
- [BioC] invalid gpr characters?
Darren Ames
- [BioC] marray: removing flagged spots from loess normalization
Oliver R. Homann
- [BioC] Developers Day 2. Aug 2006
Wolfgang Huber
- [BioC] Creating a Custom CDF Environment
martin doherty
- [BioC] unnormalised vs normalised distribution
botto
- [BioC] decideTest extraction of P values
Gordon K Smyth
- [BioC] Subsetting limma TestResults
Michael Strehle
- [BioC] BioC2006 Conference, Aug 3-4 in Seattle
Seth Falcon
- [BioC] limma: get all sig genes from multiple contrasts
Ivan Baxter
- [BioC] Subsetting limma TestResults
Gordon K Smyth
- [BioC] unnormalised vs normalised distribution
Michal Okoniewski
- [BioC] unnormalised vs normalised distribution
Jenny Drnevich
- [BioC] One channel microarray antibody analysis
Jordi Altirriba Gutiérrez
- [BioC] R warning: no package 'temp' was found
Zhang, Jacob
- [BioC] Rmpi loading error
Ye, Bin
- [BioC] multiple comparisons
Tarca, Adi
- [BioC] Rmpi loading error --- updates
Ye, Bin
- [BioC] updated BioC2006 conference scholarship offerings
Vincent Carey 525-2265
- [BioC] Combining two datasets - help to use GeneMeta.
Sharon
- [BioC] Rgraphviz edge weight question
Kimpel, Mark William
- [BioC] Rgraphviz edge weight question
Kimpel, Mark William
- [BioC] Rgraphviz edge weight question
Kimpel, Mark William
- [BioC] environment
Afsaneh
- [BioC] Ruuid had non-zero exit status
zph at herald.ox.ac.uk
- [BioC] guidance for making appropriate design matrix - for limmma use
Sharon
- [BioC] blocking in limma gives an estimability problem
Pedro López Romero
- [BioC] scripts to process array CGH data files from NimbleGen
Steven McKinney
- [BioC] rbind of MALists
Matthew Scholz
- [BioC] Scripts to handle array CGH data files from NimbleGen
Steven McKinney
- [BioC] possible boston bioconductor training, 13-15 july 2006
Vincent Carey 525-2265
- [BioC] limma: duplicateCorrelation
Christelle Dantec
- [BioC] RBGL1.8 on 64bit Linux?
Celine Carret
- [BioC] spotsegmentation
Abdel Benajjou
- [BioC] rbind of MALists
Gordon K Smyth
- [BioC] multi PMT scan combination
Miroslava Cuperlovic-Culf
- [BioC] understanding of makeContrats() in Limma
gregory voisin
- [BioC] understanding of makeContrats() in Limma
Stephen Henderson
- [BioC] [Fwd: Re: RBGL1.8 on 64bit Linux?]
Celine Carret
- [BioC] environment
Stephen Henderson
- [BioC] environment
John Zhang
- [BioC] plotAffyRNAdeg x-axis length of RNA digestion plot
Sue Jones
- [BioC] 2 Courses Near You - (1) Introduction to R/S+ programming: Microarrays Analysis and Bioconductor, (2) R/Splus Fundamentals and Programming Techniques
Sue Turner
- [BioC] environment
Nianhua Li
- [BioC] Failure to install specific packages from Bioconductor on a Linux machine running R 2.3.1
Michael Oldham
- [BioC] paired samples and duplicateCorrelation iin limma
Pedro López Romero
- [BioC] biomaRt error and no devel package for windows?
michael watson (IAH-C)
- [BioC] R command history on unix version
Jianping Jin
- [BioC] [Fwd: Re: RBGL1.8 on 64bit Linux?]
Celine Carret
- [BioC] Reading flag data from Agilent files
Florian Chain
- [BioC] Question about the appropriate uniververse for GOHyperG or hyperGtable
Ochsner, Scott A
- [BioC] plotAffyRNAdeg x-axis length of RNA digestion plot
James W. MacDonald
- [BioC] mouse4302
Nianhua Li
- [BioC] limma: duplicateCorrelation
Gordon K Smyth
- [BioC] Welch approximation: Degrees of freedom impact on pvalues
Benjamin Otto
- [BioC] median of the NUSE value
kfbargad at ehu.es
- [BioC] simpleaffy package: Exporting a PairComp object
Suzanne Szak
- [BioC] multi PMT scan combination
Matthew Scholz
- [BioC] decideTests with nestedF
Pedro López Romero
- [BioC] a problem with package limma (read.maimages)
Svetlana Bulashevska
- [BioC] limma : design matrix and topTable M values
Sue Jones
- [BioC] log2 ratio as limma input
yuhong ning
- [BioC] Farms library
phguardiol at aol.com
- [BioC] decideTests with nestedF
Gordon Smyth
- [BioC] a problem with package limma (read.maimages)
Gordon Smyth
- [BioC] combined Affybatch and mas5
Lewin Eisele
- [BioC] II Atlantic Microarray Symposium, August 24-25, Moncton NB, Canada
Miroslava Cuperlovic-Culf
- [BioC] hopach and heatmap
Ivan Baxter
- [BioC] bioconductor.org down on Tuesday June 20th 2:00pm-2:10pm Pacific Time
Herve Pages
- [BioC] AnnBuilder problem.
Dario Greco
- [BioC] log2 ratio as limma input
Gordon K Smyth
- [BioC] single-channel GenePix data
Svetlana Bulashevska
- [BioC] A question regardin duplicate correlations in limma
Manish Neupane
- [BioC] Research Associate Positions in Statistical Bioinformatics
Jae K. Lee
- [BioC] problem with limma and BlueFuse
Alessio Venier
- [BioC] AnnBuilder problem.
Nianhua Li
- [BioC] Problems loading biomaRt and XML
Jordi Altirriba Gutiérrez
- [BioC] RNA deg correction?
Tarun Nayar
- [BioC] registration materials for boston bioc training now available
Vincent Carey 525-2265
- [BioC] W: unnormalised vs normalised distribution
Benjamin Otto
- [BioC] display goCluster graph with specific go term
TM
- [BioC] multtest error - class label problem
yuhong ning
- [BioC] Positions in Biostatistics/Bioinformatics
Therese Sørlie
- [BioC] problem with limma and BlueFuse
Gordon K Smyth
- [BioC] limma duplicateCorrelation does not return 'all.correlations'
Krys Kelly
- [BioC] multtest error - class label problem
Yuhong Ning
- [BioC] limma duplicateCorrelation does not return 'all.correlations'
Gordon Smyth
- [BioC] vector allocation error
Ulrich Pfeffer
- [BioC] Problems loading biomaRt and XML
Jordi Altirriba Gutiérrez
- [BioC] query gramene from biomaRt package
Tine Casneuf
- [BioC] Mouse exon array probes
Richard Williams
- [BioC] classifier using R
Nadege Nana
- [BioC] How to read a subset of the .CEL files
Alvord, Greg (DMS) [Contr]
- [BioC] Simpleaffy QC error with Vinis vinifera chips
Tarun Nayar
- [BioC] Package wyr?
Mohammad Esad-Djou
- [BioC] classifier using R
Stephen Henderson
- [BioC] Imaging of Protein Array
内田靖哉
- [BioC] Duplicate row.names error
Andre
- [BioC] Two Slides Question
Chen, Kegui
- [BioC] Two Slides Question
Chen, Kegui
- [BioC] The ECCB early-registration deadline is July 10th!
Hershel Safer
- [BioC] limma output
stephanie walter
- [BioC] just.gcrma and normalisation
alex lam (RI)
- [BioC] Imaging of Protein Array
Jordi Altirriba Gutiérrez
- [BioC] How to read a subset of the .CEL files
Roayaei, Jean (DMS) [Contr]
- [BioC] Copying text from www.bioconductor.org web pages?
Earl F. Glynn
- [BioC] xval in MLInterfaces package
Wu, Xiwei
- [BioC] xval in MLInterfaces package
Wu, Xiwei
- [BioC] problem with biomaRt and mouse affy queries
Vincent Detours
- [BioC] duplicateCorrelation and day effect in limma
Pedro López Romero
- [BioC] goCluster plot interpretation
TM
- [BioC] Error in using qc in simpleaffy.
Sharon
- [BioC] goCluster plot with heatmap visualization method
TM
- [BioC] affy & problems with memory
Yi-Mo Deng
- [BioC] How to read a subset of the .CEL files
Alvord, Greg (DMS) [Contr]
- [BioC] vsn and microarray blank spots
Alessio Venier
- [BioC] normalize.AffyBatch.quantiles and NA values
odlc at uchicago.edu
Last message date:
Fri Jun 30 16:33:44 CEST 2006
Archived on: Sat Jul 1 09:05:45 CEST 2006
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