[BioC] error message in gcrma

[Kasper Daniel Hansen]

GO is a metadata package, look at
   http://www.bioconductor.org/packages/1.8/AnnotationData.html

You also (probably) need some chip specific packagages for gcrma like  
hgu95av2, hgu95av2cdf, hgu95av2probe (substitute hgu95av2 with the  
chips(s) you are using).

/Kasper

On Jun 6, 2006, at 3:09 AM, Mohammad Esad-Djou wrote:

>
>
>  I installed some packages. Now I do not find to package "GO".
>
> I searched under this address:
> http://bioconductor.org/packages/1.8/GO.html
>
> where can I find “GO”?
>
> Thanks,
> Mohammad
>
>> -----Ursprüngliche Nachricht-----
>> Von: Seth Falcon <sfalcon at fhcrc.org>
>> Gesendet: 05.06.06 20:54:02
>> An: bioconductor at stat.math.ethz.ch
>> Betreff: Re: [BioC] error message in gcrma
>
>
>> Mohammad Esad-Djou <shahrgol at web.de> writes:
>>
>>>> What you can do is to download the source packages that you want  
>>>> and
>>>> then transfer them to your Linux system.  You can install source
>>>> packages on Linux using:
>>>>
>>>> R CMD INSTALL  somepkg_1.2.3.tar.gz
>>>>
>>>> However, you will have to resolve package dependencies  
>>>> yourself.  This
>>>> is unfortunate and something I'm interested in improving with some
>>>> alternate dependency tracking tools.
>>>
>>> I know, but I do not know, which Package needs gcrma!
>>
>> For any package, you can easily determine the packages it depends on
>> and the packages that depend on it by reviewing the package summary
>> listing.  So for gcrma take a look at the Depends and DependsOnMe
>> fields here:
>>
>> http://www.bioconductor.org/packages/1.8/bioc/html/gcrma.html
>>
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>
>
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