[BioC] limma output
stephanie.walter at ucd.ie
Tue Jun 27 13:46:16 CEST 2006
I'm using limma to normalize and analyse two colour dye swap arrays.
In the output file I am getting two different p values:
I attached an example of the command file I'm using.
I suppose the first p value (p.value) is the raw p value and the
second (F.p.value) is the p value adjusted with the FDR value. Can you
please tell me if this assumption is correct and if it is correct to
use this F.p.value to make conclusions on differential gene
Thank you very much,
University College Dublin
College of Life Sciences
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