[BioC] xval in MLInterfaces package

Wu, Xiwei XWu at coh.org
Tue Jun 27 23:18:50 CEST 2006


Hi, all, 

I am testing the xval() function under MLInterfaces package following
the documentation.  

> lk1 <- xval(smallG, "ALL.AML", knnB, xvalMethod="LOO",
group=as.integer(0))

I am wondering when I invoke above, is knnB being invoked with the
default set of parameters to do Leave-One-Out cross validation? If so,
is it possible to specify my own parameters, such as k and l?

Thanks in advance.

Xiwei Wu, MD, PhD 
Director, Affymetrix Core Facility
Assistant Research Scientist
Department of Biomedical Informatics
Beckman Research Institute
City of Hope National Medical Center
Duarte, CA 91010
Phone: (626) 359-8111 ext. 65071

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