[BioC] AnnBuilder problem.

[Dario Greco]

hi,
i am trying to build an annotation package based on EntrezGene IDs.

myBase is a tab-delimited file with arrayID and LocusLink ID;
myBaseType <- "ll";
mySrcUrls <- getOption("AnnBuilderSourceUrls")

here is the copied/pasted code from the vignette, but i get some errors and 
warnings:

> if (.Platform$OS.type != "windows" && interactive()) {
+ ABPkgBuilder(baseName = myBase, srcUrls = mySrcUrls, baseMapType = 
myBaseType, pkgName = "myPkg", pkgPath = myDir,organism = "Homo sapiens", 
version = "1.1.0", fromWeb = TRUE)}

Attaching package: 'GO'
        The following object(s) are masked from package:AnnBuilder :
         GO

Error in readLines(con) : cannot open the connection
In addition: Warning messages:
1: use of NULL environment is deprecated
2: unable to resolve 'archive.godatabase.org'.

what is the error about? how can i fix this?

thanks in advance 
dario

-- 

Dario Greco

Institute of Biotechnology - University of Helsinki
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