[BioC] limma duplicateCorrelation does not return 'all.correlations'

Gordon Smyth smyth at wehi.EDU.AU
Fri Jun 23 12:17:13 CEST 2006

>Date: Thu, 22 Jun 2006 17:22:17 +0100
>From: "Krys Kelly" <kak28 at cam.ac.uk>
>Subject: [BioC] limma duplicateCorrelation does not return
>         'all.correlations'
>To: <bioconductor at stat.math.ethz.ch>
>Content-Type: text/plain
>I am trying to fit a model when there are duplicate spots on the arrays,
>following section 11.6 of the limma User's Guide. I was getting confusing
>error messages. After some time, I looked at the code for
>duplicateCorrelation. It seems that it does not return 'all.correlations' as
>in the User Guide, but rather 'atanh.correlations'. I realize now that the
>help for duplicateCorrelation gives the correct listing of the values
>returned, but I wonder if the User Guide could be updated at some point.

Dear Krys,

Thanks for pointing this out. It will be corrected in limma 2.7.6.

Best wishes

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