[BioC] Rmpi loading error --- updates

Ye, Bin binye at med.wayne.edu
Fri Jun 9 22:14:14 CEST 2006

Thank you! I actually get it done successfully after set LD_LIBRARY_PATH and LD_PRELOAD. 


-----Original Message-----
From: Jake [mailto:jjmichael at comcast.net]
Sent: Fri 6/9/2006 3:18 PM
To: Ye, Bin
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] Rmpi loading error --- updates
You'll have more luck posting to the r-help list since this is not a
BioC-specific problem.


On Fri, 2006-06-09 at 14:27 -0400, Ye, Bin wrote:
> Hi, 
> I've add the libmpi.so.0 path to $LD_LIBRARY_PATH, now error is:
> > library("Rmpi")
> Error in dyn.load(x, as.logical(local), as.logical(now)) :
>         unable to load shared library '/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so':
>   /usr/local/lam-7.1.2/lib/liblam.so.0: undefined symbol: openpty
> Error in library("Rmpi") : .First.lib failed for 'Rmpi'
> Error in dyn.unload(x) : dynamic/shared library '/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so' was not loaded
> What does it mean? I'm not so familar with linux, any help will be appreciated!
> Thanks a lot!
> Bin
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