[BioC] Rmpi loading error
Ye, Bin
binye at med.wayne.edu
Fri Jun 9 19:47:06 CEST 2006
Hi, Everyone,
WE have R 2.2.0 installed on linux (federo), and lam/mpi installed under /usr/local/lam-7.1.2, installed Rmpi_0.5-2 without an error. But when try to load the library get error as below:
> library("Rmpi")
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library '/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so':
libmpi.so.0: cannot open shared object file: No such file or directory
Error in library("Rmpi") : .First.lib failed for 'Rmpi'
Error in dyn.unload(x) : dynamic/shared library '/usr/local/lib64/R/library/Rmpi/libs/Rmpi.so' was not loaded
> system("echo $PATH")
/usr/local/lam-7.1.2/bin:/usr/local/lam-7.1.2/bin:/usr/local/pdsh/bin:/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/opt/c3-4/:/usr/local/mcm:/usr/local/moab/bin:/usr/local/moab/sbin:/opt/moab:/usr/local/pbs/bin:/usr/local/pbs/sbin:/home/binye/bin
> system("ls /usr/local/lam-7.1.2/lib")
lam liblamf77mpi.so.0.0.0 liblammpi++.so.0 libmpi.la
liblam.a liblam.la liblammpi++.so.0.0.0 libmpi.so
liblamf77mpi.a liblammpi++.a liblam.so libmpi.so.0
liblamf77mpi.la liblammpi++.la liblam.so.0 libmpi.so.0.0.0
liblamf77mpi.so liblammpio.a liblam.so.0.0.0
liblamf77mpi.so.0 liblammpi++.so libmpi.a
The libmpi.so.0 is there, and the path is correct, why Rmpi can't find libmpi.so.0?
Thanks a lot in advance!
Bin
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