[BioC] Scripts to handle array CGH data files from NimbleGen

[Sean Davis]

Steven McKinney wrote:
> 
> Before I reinvent the wheel, has anyone set up scripts to read in
> array CGH data files from NimbleGen, for use in the aCGH package or
> a similar package?
> 
> I have normalized NimbleGen files
> ([array_id]_[identifier]_normalized.txt in the NimbleGen naming scheme)
> several to a directory, to read in and use to create an aCGH object.
> 
> Any info appreciated.

You might want to look at the oligo and tilingArray packages (and maybe 
others).  If I remember, each can handle nimblegen arrays--the authors 
can probably be more specific.

Sean