[BioC] Scripts to handle array CGH data files from NimbleGen

Steven McKinney smckinney at bccrc.ca
Tue Jun 13 01:50:21 CEST 2006

Before I reinvent the wheel, has anyone set up scripts to read in
array CGH data files from NimbleGen, for use in the aCGH package or
a similar package?

I have normalized NimbleGen files
([array_id]_[identifier]_normalized.txt in the NimbleGen naming scheme)
several to a directory, to read in and use to create an aCGH object.

Any info appreciated.


Steve McKinney

Steven McKinney

Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre

smckinney at bccrc.ca

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