[BioC] Scripts to handle array CGH data files from NimbleGen

Todd Richmond todd at nimblegen.com
Tue Jun 13 15:55:55 CEST 2006

Steven McKinney wrote:
> Before I reinvent the wheel, has anyone set up scripts to read in
> array CGH data files from NimbleGen, for use in the aCGH package or
> a similar package?
> I have normalized NimbleGen files
> ([array_id]_[identifier]_normalized.txt in the NimbleGen naming scheme)
> several to a directory, to read in and use to create an aCGH object.

I might have one or two scripts that might be of use.  :)
I have a wrapper package for DNAcopy that loads the ratio files and 
allows you to pass along parameters to the DNAcopy's segment function. 
Contact me off-list if you're interested.


Todd Richmond, PhD
Manager of Research Informatics
NimbleGen Systems, Inc
Madison, WI 53719

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