[BioC] Problems loading biomaRt and XML
Jordi Altirriba Gutiérrez
altirriba at hotmail.com
Tue Jun 20 21:12:15 CEST 2006
Dear BioC users,
I am trying to run biomaRt, but I am not able to do it.
I install (in R under Windows OS) biomaRt through:
Packages -> Install package(s)
-> biomaRt
Then I load it:
>library(biomaRt)
Loading required package: XML
Error: package 'XML' could not be loaded
Además: Warning message:
there is no package called 'XML' in: library(pkg, character.only = TRUE,
logical = TRUE, lib.loc = lib.loc)
After this I install XML (without any problems) and I re-load biomaRt, but
an error message appears in a new window (I am translating it, as the
messages are in Spainsh):
The entrance point of _htmlDefaultSAXHandler procedure cant be found in the
library of dynamic links libxml2.dll
Moreover in the R window appears:
Loading required package: XML
Error in dyn.load(x, as.logical(local), as.logical(now)) :
impossible to load the shared library
'C:/ARCHIV~1/R/R-23~1.1/library/XML/libs/XML.dll':
LoadLibrary failure: The specified process was no found.
Error: .onLoad failed in 'loadNamespace' for 'XML'
Error: package 'XML' could not be loaded
I have removed R and reinstalled it, and repeated all the process;
nevertheless the errors are the same. I have tried to found a solution in
Google and gmane, although I dont have been able to found it.
>sessionInfo()
Version 2.3.1 (2006-06-01)
i386-pc-mingw32
attached base packages:
[1] "methods" "stats" "graphics" "grDevices" "utils" "datasets"
"base"
Many thanks in advance for your help!
Yours faithfully,
Jordi Altirriba
PhD student
Hospital Clinic, Barcelona, Spain
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