March 2013 Archives by thread

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Starting: Fri Mar 1 03:16:50 CET 2013
Ending: Sun Mar 31 22:16:54 CEST 2013
Messages: 668

• [BioC] ChIPpeakAnno "examplePattern.fa" file   Paul Shannon
  • [BioC] ChIPpeakAnno "examplePattern.fa" file   José Luis Lavín
• [BioC] Visualization of alignments with mismatch bases   Michael Lawrence
  • [BioC] Visualization of alignments with mismatch bases   Tengfei Yin
    • [BioC] Visualization of alignments with mismatch bases   Michael Lawrence
      • [BioC] Visualization of alignments with mismatch bases   Tengfei Yin
      • [BioC] Visualization of alignments with mismatch bases   Martin Morgan
      • [BioC] Visualization of alignments with mismatch bases   Tengfei Yin
• [BioC] Normalization   Gordon K Smyth
• [BioC] easyRNA adapting annotations to avoid overlapping synthetic exons   Nicolas Delhomme
• [BioC] workflow from NormqPCR 5.1 to 5.3   James Perkins
• [BioC] problem with reading gpr files   konika chawla
  • [BioC] Fwd: problem with reading gpr files   konika chawla
    • [BioC] Fwd: problem with reading gpr files   Maciej Jończyk
      • [BioC] problem with reading gpr files   konika chawla
      • [BioC] problem with reading gpr files   konika chawla
• [BioC] multi-mapped reads: Cufflinks + baySeq? edgeR?   Hilary [guest]
  • [BioC] multi-mapped reads: Cufflinks + baySeq? edgeR?   Ryan C. Thompson
  • [BioC] multi-mapped reads: Cufflinks + baySeq? edgeR?   Hilary [guest]
• [BioC] statistical test for pairwise comparison   chris Jhon
• [BioC] Crlmm package   khadeeja ismail
  • [BioC] Crlmm package   Matthew Ritchie
• [BioC] cummerbund how to get matrix for csheatmap   Adrian Johnson
  • [BioC] cummerbund how to get matrix for csheatmap   Valerie Obenchain
    • [BioC] cummerbund how to get matrix for csheatmap   Loyal Goff
      • [BioC] cummerbund how to get matrix for csheatmap   Adrian Johnson
• [BioC] BSgenome.Dmelanogaster.UCSC.dm3 in R 3.0   Dan Tenenbaum
• [BioC] How to annotate Illumina HumanHT-12 v3 chips?   Feng Tian
  • [BioC] how to annotate Illumina HumanHT-12 v3 chips?   Feng Tian
  • [BioC] how to annotate Illumina HumanHT-12 v3 chips?   Ying Wu
    • [BioC] how to annotate Illumina HumanHT-12 v3 chips?   Mark Dunning
      • [BioC] how to annotate Illumina HumanHT-12 v3 chips?   Steve Lianoglou
      • [BioC] how to annotate Illumina HumanHT-12 v3 chips?   Kevin R. Coombes
• [BioC] pileup coverage from BAM file   Martin Morgan
• [BioC] annotationTools: character vector clean-up   Hooiveld, Guido
• [BioC] A question about MAplot in the oligo package   He, Yiwen (NIH/CIT) [C]
• [BioC] Retrieving all entrez identifiers that are annotated in KEGG pathways   Anirban [guest]
  • [BioC] Retrieving all entrez identifiers that are annotated in KEGG pathways   ANIRBAN BHAR
  • [BioC] Retrieving all entrez identifiers that are annotated in KEGG pathways   James W. MacDonald
    • [BioC] Retrieving all entrez identifiers that are annotated in KEGG pathways   ANIRBAN BHAR
• [BioC] import.chain: where are the chain files?   Wim Kreinen
  • [BioC] import.chain: where are the chain files?   Vincent Carey
• [BioC] Question: type of NOISeq package input file   Chuanbao [guest]
• [BioC] illegal operand when I run DEXSeq   Wolfgang Huber
  • [BioC] illegal operand when I run DEXSeq   Ou, Jianhong
• [BioC] finding neigbouring intervals for 2 GRange objects   Hermann Norpois
  • [BioC] finding neigbouring intervals for 2 GRange objects   Harris A. Jaffee
    • [BioC] finding neigbouring intervals for 2 GRange objects   Valerie Obenchain
      • [BioC] finding neigbouring intervals for 2 GRange objects   Michael Lawrence
      • [BioC] finding neigbouring intervals for 2 GRange objects   Hervé Pagès
      • [BioC] finding neigbouring intervals for 2 GRange objects   Valerie Obenchain
• [BioC] how to use the confs value in crlmm   Shrek [guest]
  • [BioC] how to use the confs value in crlmm   Benilton Carvalho
• [BioC] Practical Workshop on High-Throughput Sequencing Data Analysis. 30 Sep - 4 Oct 2013, OIST, Okinawa, Japan   Kathi Zarnack
• [BioC] N   Sandeep Jose Joseph
• [BioC] ComBat: How to choose multiple covariates in ComBat analysis- Need advice   Johnson, William Evan
• [BioC] matchPWM() questions   Ugo Borello
  • [BioC] matchPWM() questions   Hervé Pagès
    • [BioC] matchPWM() questions   Ugo Borello
• [BioC] Analysing grouped datasets in repitools   Andrew Beggs [guest]
• [BioC] SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?   Steve Piccolo
  • [BioC] SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?   Andrew Yates
• [BioC] Questions about MAplot in the oligo package   He, Yiwen (NIH/CIT) [C]
  • [BioC] Questions about MAplot in the oligo package   Benilton Carvalho
    • [BioC] Questions about MAplot in the oligo package   He, Yiwen (NIH/CIT) [C]
• [BioC] enabling reproducible research & R package management & install.package.version & BiocLite   Cook, Malcolm
  • [BioC] enabling reproducible research & R package management & install.package.version & BiocLite   Aaron Mackey
    • [BioC] enabling reproducible research & R package management & install.package.version & BiocLite   Steve Lianoglou
      • [BioC] [Rd] enabling reproducible research & R package management & install.package.version & BiocLite   Dan Tenenbaum
      • [BioC] [Rd] enabling reproducible research & R package management & install.package.version & BiocLite   Cook, Malcolm
      • [BioC] [Rd] enabling reproducible research & R package management & install.package.version & BiocLite   Geoff Jentry
    • [BioC] [Rd] enabling reproducible research & R package management & install.package.version & BiocLite   Cook, Malcolm
      • [BioC] [Rd] enabling reproducible research & R package management & install.package.version & BiocLite   Steve Lianoglou
      • [BioC] [Rd] enabling reproducible research & R package management & install.package.version & BiocLite   Cook, Malcolm
      • [BioC] [Rd] enabling reproducible research & R package management & install.package.version & BiocLite   Lapointe, David
      • [BioC] [Rd] enabling reproducible research & R package management & install.package.version & BiocLite   Cook, Malcolm
      • [BioC] [Rd] enabling reproducible research & R package management & install.package.version & BiocLite   Tim Triche, Jr.
• [BioC] flowQ loading error after installing ImageMagick   Chandra Jack [guest]
  • [BioC] flowQ loading error after installing ImageMagick   Dan Tenenbaum
    • [BioC] flowQ loading error after installing ImageMagick   Chandra Jack
      • [BioC] flowQ loading error after installing ImageMagick   Dan Tenenbaum
      • [BioC] flowQ loading error after installing ImageMagick   Chandra Jack
      • [BioC] flowQ loading error after installing ImageMagick   Dan Tenenbaum
      • [BioC] flowQ loading error after installing ImageMagick   Chandra Jack
      • [BioC] flowQ loading error after installing ImageMagick   Dan Tenenbaum
      • [BioC] flowQ loading error after installing ImageMagick   Chandra Jack
      • [BioC] flowQ loading error after installing ImageMagick   Dan Tenenbaum
      • [BioC] flowQ loading error after installing ImageMagick   Chandra Jack
      • [BioC] flowQ loading error after installing ImageMagick   Nikolas Pontikos
      • [BioC] flowQ loading error after installing ImageMagick   Dan Tenenbaum
      • [BioC] flowQ loading error after installing ImageMagick   Chandra Jack
      • [BioC] flowQ loading error after installing ImageMagick   Dan Tenenbaum
      • [BioC] flowQ loading error after installing ImageMagick   Harris A. Jaffee
      • [BioC] flowQ loading error after installing ImageMagick   Chandra Jack
      • [BioC] flowQ loading error after installing ImageMagick   Dan Tenenbaum
      • [BioC] flowQ loading error after installing ImageMagick   Chandra Jack
      • [BioC] flowQ loading error after installing ImageMagick   Dan Tenenbaum
• [BioC] Limma: difficulties making multiple comparisons within one multiple-group model   Scott Robinson [guest]
  • [BioC] Limma: difficulties making multiple comparisons within one multiple-group model   Gordon K Smyth
    • [BioC] Limma: difficulties making multiple comparisons within one multiple-group model   Scott Robinson
• [BioC] VariantAnnotation::readVcf is reordering the FORMAT field of my VCF file   hickey at wehi.EDU.AU
  • [BioC] VariantAnnotation::readVcf is reordering the FORMAT field of my VCF file   Valerie Obenchain
    • [BioC] VariantAnnotation::readVcf is reordering the FORMAT field of my VCF file   Peter Hickey
• [BioC] makeTranscriptDbFromBiomart - yeast - 2micron plasmid missing   Stefanie Tauber
  • [BioC] makeTranscriptDbFromBiomart - yeast - 2micron plasmid missing   Hervé Pagès
• [BioC] edgeR log likelihood values of GLM   Ari Eszter
  • [BioC] edgeR log likelihood values of GLM   Gordon K Smyth
• [BioC] Problem in installing biocLite package   Mohit Swarnkar
  • [BioC] Problem in installing biocLite package   Dan Tenenbaum
• [BioC] edgeR design matrix and contrast questions   Findley Finseth
  • [BioC] edgeR design matrix and contrast questions   Ryan Thompson
    • [BioC] edgeR design matrix and contrast questions   Findley Finseth
    • [BioC] edgeR design matrix and contrast questions   Ryan C. Thompson
  • [BioC] edgeR design matrix and contrast questions   Gordon K Smyth
    • [BioC] edgeR design matrix and contrast questions   Gordon K Smyth
      • [BioC] edgeR design matrix and contrast questions   Findley Finseth
      • [BioC] multiple pairs plot in a single window   Natasha Sahgal
      • [BioC] multiple pairs plot in a single window   James W. MacDonald
      • [BioC] multiple pairs plot in a single window   Natasha Sahgal
      • [BioC] multiple pairs plot in a single window   James W. MacDonald
• [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   Naxerova, Kamila
  • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   cstrato
  • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   James W. MacDonald
    • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   Naxerova, Kamila
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   cstrato
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   James W. MacDonald
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   Naxerova, Kamila
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   Naxerova, Kamila
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   James W. MacDonald
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   Naxerova, Kamila
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   James W. MacDonald
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   James W. MacDonald
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   Naxerova, Kamila
      • [BioC] Multiple multivariate regression using glmnet   somnath bandyopadhyay
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   Benilton Carvalho
    • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   Hooiveld, Guido
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   Hooiveld, Guido
      • [BioC] Analysis of Affymetrix Mouse Gene 2.0 ST arrays   James W. MacDonald
• [BioC] limma edger setting up linear model   steven wink
  • [BioC] limma edger setting up linear model   Steven
• [BioC] Running new and old versions of edgeR concurrently   Gordon K Smyth
• [BioC] Cannot connect to unimart using biomaRt   Dana Pascovici [guest]
  • [BioC] Cannot connect to unimart using biomaRt   Steffen Durinck
• [BioC] DESeq - plotPCA   Zaki Fadlullah [guest]
  • [BioC] DESeq - plotPCA   James W. MacDonald
  • [BioC] DESeq - plotPCA   Simon Anders
    • [BioC] DESeq - plotPCA   Wolfgang Huber
• [BioC] EasyRNASeq - gff file is not recognized   Gabriela [guest]
  • [BioC] EasyRNASeq - gff file is not recognized   Nicolas Delhomme
    • [BioC] EasyRNASeq - gff file is not recognized   Nicolas Delhomme
• [BioC] RPKM calculation genewise   Nicolas Delhomme
• [BioC] options on outputing gene expression based on gene level instead of probe set level for justRMA   Jack Luo
  • [BioC] options on outputing gene expression based on gene level instead of probe set level for justRMA   James W. MacDonald
    • [BioC] options on outputing gene expression based on gene level instead of probe set level for justRMA   James W. MacDonald
      • [BioC] options on outputing gene expression based on gene level instead of probe set level for justRMA   Jack Luo
  • [BioC] options on outputing gene expression based on gene level instead of probe set level for justRMA   Peter Langfelder
• [BioC] build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?   Zhu, Lihua (Julie)
• [BioC] ReadqPCR: [[hkgs,]] incorrect number of dimensions   Franklin Johnson [guest]
  • [BioC] ReadqPCR: [[hkgs,]] incorrect number of dimensions   James Perkins
    • [BioC] ReadqPCR: [[hkgs,]] incorrect number of dimensions   Johnson, Franklin Theodore
• [BioC] Beadarray - combining the 2 swath files   Sunitha M
• [BioC] beadarray - combining swath files   Sunitha M
• [BioC] edgeR: new defaults of estimateTagwiseDisp and exactTest   Zhuzhu Zhang
  • [BioC] edgeR: new defaults of estimateTagwiseDisp and exactTest   Gordon K Smyth
    • [BioC] edgeR: new defaults of estimateTagwiseDisp and exactTest   Zhuzhu Zhang
      • [BioC] edgeR: new defaults of estimateTagwiseDisp and exactTest   Gordon K Smyth
• [BioC] IlluminaHumanMethylation450kprobe for nearest TSS calculation question   Dale Watkins [guest]
  • [BioC] IlluminaHumanMethylation450kprobe for nearest TSS calculation question   Tim Triche, Jr.
    • [BioC] IlluminaHumanMethylation450kprobe for nearest TSS calculation question   Watkins, Dale (Health)
      • [BioC] IlluminaHumanMethylation450kprobe for nearest TSS calculation question   Florence Cavalli
      • [BioC] IlluminaHumanMethylation450kprobe for nearest TSS calculation question   Tim Triche, Jr.
• [BioC] Annotation problem with Microarray Gene Rat ST 1.0   Antje Kammermeier
  • [BioC] Annotation problem with Microarray Gene Rat ST 1.0   James W. MacDonald
• [BioC] Expected value of finding a sequence   Tim Smith
• [BioC] Visualization of metabolic network in lpSolve format   Denis Kazakiewicz
  • [BioC] Visualization of metabolic network in lpSolve format   Paul Shannon
    • [BioC] Visualization of metabolic network in lpSolve format   Denis Kazakiewicz
      • [BioC] Fwd: Re: Visualization of metabolic network in lpSolve format   Denis Kazakiewicz
      • [BioC] Visualization of metabolic network in lpSolve format   Denis Kazakiewicz
      • [BioC] Visualization of metabolic network in lpSolve format   Paul Shannon
      • [BioC] Visualization of metabolic network in lpSolve format   Denis Kazakiewicz
      • [BioC] Visualization of metabolic network in lpSolve format   Paul Shannon
      • [BioC] Visualization of metabolic network in lpSolve format   Denis Kazakiewicz
• [BioC] methyAnalysis - changes to GenoSet   Lavinia Gordon
  • [BioC] methyAnalysis - changes to GenoSet   Martin Morgan
    • [BioC] methyAnalysis - changes to GenoSet   Lavinia Gordon
      • [BioC] methyAnalysis - changes to GenoSet   Kasper Daniel Hansen
      • [BioC] methyAnalysis - changes to GenoSet   Tim Triche, Jr.
• [BioC] Testing for logFC significantly larger than threshold; or: calculating confidence intervals in limma   January Weiner
  • [BioC] Testing for logFC significantly larger than threshold; or: calculating confidence intervals in limma   Hooiveld, Guido
• [BioC] cummeRbund   valentina indio [guest]
  • [BioC] cummeRbund   Dan Du
• [BioC] biocLite and unknown svn revision   Michael Lawrence
  • [BioC] biocLite and unknown svn revision   Martin Morgan
    • [BioC] biocLite and unknown svn revision   Dan Tenenbaum
      • [BioC] biocLite and unknown svn revision   Michael Lawrence
      • [BioC] biocLite and unknown svn revision   Martin Morgan
• [BioC] EBImage: filtering in the presence of NAs   Arnaud Duranel
  • [BioC] EBImage: filtering in the presence of NAs   Wolfgang Huber
    • [BioC] EBImage: filtering in the presence of NAs   Wolfgang Huber
      • [BioC] EBImage: filtering in the presence of NAs   Arnaud Duranel
• [BioC] (no subject)   Liu, XiaoChuan
  • [BioC] (no subject)   Simon Anders
    • [BioC] (no subject)   Liu, XiaoChuan
    • [BioC] ANOVA test after VST in DESeq   Liu, XiaoChuan
      • [BioC] ANOVA test after VST in DESeq   Simon Anders
      • [BioC] metabolite to gene - mapping   n omranian
      • [BioC] metabolite to gene - mapping   Richard Friedman
      • [BioC] metabolite to gene - mapping   n omranian
      • [BioC] metabolite to gene - mapping   Richard Friedman
      • [BioC] metabolite to gene - mapping   Marc Carlson
      • [BioC] metabolite to gene - mapping   Marc Carlson
  • [BioC] (no subject)   Gordon K Smyth
    • [BioC] QuasiSeq vs DSS   Gordon K Smyth
  • [BioC] (no subject)   Deisy Gysi
    • [BioC] (no subject)   Valerie Obenchain
• [BioC] Expected value of finding a sequence (Tim Smith)   Alvaro J. González
  • [BioC] Expected value of finding a sequence (Tim Smith)   Alvaro J. González
  • [BioC] Expected value of finding a sequence (Tim Smith)   Alvaro J. González
• [BioC] make check with Biobase 2.18.0   Nigel Horne
  • [BioC] make check with Biobase 2.18.0   Dan Tenenbaum
    • [BioC] make check with Biobase 2.18.0   Martin Morgan
      • [BioC] make check with Biobase 2.18.0   Nigel Horne
      • [BioC] make check with Biobase 2.18.0   Dan Tenenbaum
      • [BioC] make check with Biobase 2.18.0   Martin Morgan
      • [BioC] make check with Biobase 2.18.0   Dan Tenenbaum
      • [BioC] make check with Biobase 2.18.0   Nigel Horne
      • [BioC] make check with Biobase 2.18.0   Dan Tenenbaum
      • [BioC] make check with Biobase 2.18.0   Nigel Horne
• [BioC] combine two microarray datasets based on affymatrix and cDNA array   Avinash [guest]
  • [BioC] combine two microarray datasets based on affymatrix and cDNA array   Sean Davis
    • [BioC] combine two microarray datasets based on affymatrix and cDNA array   avinash sethi
      • [BioC] combine two microarray datasets based on affymatrix and cDNA array   Sean Davis
• [BioC] topGO expected values showing NA   Kishor Tappita
• [BioC] topGO expected value column showing NA   Kishor Tappita
• [BioC] no method for coercing this S4 class to a vector   Thiago Maia
  • [BioC] no method for coercing this S4 class to a vector   Thiago Maia
    • [BioC] no method for coercing this S4 class to a vector   Martin Morgan
      • [BioC] no method for coercing this S4 class to a vector   Thiago Maia
      • [BioC] no method for coercing this S4 class to a vector   Martin Morgan
      • [BioC] no method for coercing this S4 class to a vector   Martin Morgan
• [BioC] JOB: 3 year post for Postdoctoral Research Scientist in Statistical Functional Genomics at University of Oxford   Peter Humburg
• [BioC] Negative parameter error when using goseq   Tarca, Adi
  • [BioC] Negative parameter error when using goseq   Nadia Davidson
• [BioC] Boston Bioconductor Basics, April 4-5 2013, only two spots left   Vincent Carey
• [BioC] negative correlation from limma's duplicateCorrelation   Ian Sudbery
  • [BioC] negative correlation from limma's duplicateCorrelation   Gordon K Smyth
• [BioC] anova like test in edgeR   Luis alberto Martinez lopez
  • [BioC] anova like test in edgeR   Ryan C. Thompson
    • [BioC] anova like test in edgeR   Ryan C. Thompson
  • [BioC] anova like test in edgeR   Gordon K Smyth
    • [BioC] anova like test in edgeR   Gordon K Smyth
• [BioC] edgeR: paired samples DGE and GLM   Alessandra [guest]
  • [BioC] edgeR: paired samples DGE and GLM   Ryan C. Thompson
• [BioC] QuasiSeq vs DSS   Richard Friedman
  • [BioC] QuasiSeq vs DSS   Ryan C. Thompson
    • [BioC] QuasiSeq vs DSS   Richard Friedman
      • [BioC] QuasiSeq vs DSS   Ryan C. Thompson
• [BioC] displaying the image with EBImage   Nima [guest]
  • [BioC] displaying the image with EBImage   Wolfgang Huber
    • [BioC] displaying the image with EBImage   Nima Ahmadian
      • [BioC] displaying the image with EBImage   Andrzej Oleś
      • [BioC] displaying the image with EBImage   Nima Ahmadian
• [BioC] Help on Illumina HumanHT12 v4 chromosome filtering   Kemal Akat
• [BioC] Subsampling of BAM/SAM alignments   Julian Gehring
  • [BioC] Subsampling of BAM/SAM alignments   Martin Morgan
    • [BioC] Subsampling of BAM/SAM alignments   Martin Morgan
      • [BioC] Subsampling of BAM/SAM alignments   Julian Gehring
• [BioC] DESeq2   Wolfgang Huber
  • [BioC] DESeq2   Ryan C. Thompson
    • [BioC] DESeq2   Michael Love
  • [BioC] DESeq2   Mariana Boroni
    • [BioC] DESeq2   Dan Tenenbaum
      • [BioC] DESeq2   Michael Love
• [BioC] ArrayExpress Question   Amy Vandiver
  • [BioC] ArrayExpress Question   Ibrahim Emam
• [BioC] Error in getGEO command with GSEMatrix=TRUE   Marwaha, Shruti (marwahsi)
  • [BioC] Error in getGEO command with GSEMatrix=TRUE   Sean Davis
    • [BioC] Error in getGEO command with GSEMatrix=TRUE   Marwaha, Shruti (marwahsi)
• [BioC] biomaRt access for NCBIM37 build of mouse genome   chris_utah
  • [BioC] biomaRt access for NCBIM37 build of mouse genome   Hans-Rudolf Hotz
    • [BioC] biomaRt access for NCBIM37 build of mouse genome   Christopher T Gregg
• [BioC] issue when doing program.   Laya Rose
  • [BioC] issue when doing program.   James W. MacDonald
    • [BioC] issue when doing program.   James W. MacDonald
      • [BioC] issue when doing program.   James W. MacDonald
• [BioC] downloading a conservation track with rtracklayer on several chromosome seqs   Dario Strbenac
• [BioC] Loading eSet.r objects from ArrayExpress   Ibrahim Emam
• [BioC] startup options   Kasper Daniel Hansen
  • [BioC] startup options   Benilton Carvalho
    • [BioC] startup options   Nicolas Delhomme
      • [BioC] startup options   Martin Morgan
• [BioC] Bioconductor Digest, Vol 121, Issue 13   Thornton, Matthew
• [BioC] time course analyses Illumina RNA-seq data   Sandra Rehan
  • [BioC] time course analyses Illumina RNA-seq data   Steve Lianoglou
    • [BioC] time course analyses Illumina RNA-seq data   Ryan C. Thompson
• [BioC] R Advanced Programming Courses by XLSolutions Corp   sue at xlsolutions-corp.com
• [BioC] yieldSize and paired end data in SummarizeOverlaps error?   Thomas Whisenant
  • [BioC] yieldSize and paired end data in SummarizeOverlaps error?   Valerie Obenchain
    • [BioC] yieldSize and paired end data in SummarizeOverlaps error?   Michael Lawrence
      • [BioC] yieldSize and paired end data in SummarizeOverlaps error?   Ryan C. Thompson
      • [BioC] yieldSize and paired end data in SummarizeOverlaps error?   Valerie Obenchain
      • [BioC] yieldSize and paired end data in SummarizeOverlaps error?   Ryan C. Thompson
• [BioC] biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails   Wim Kreinen
  • [BioC] biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails   Dan Tenenbaum
• [BioC] Quick questions about RCytoscape   Ricardo Silva
  • [BioC] Quick questions about RCytoscape   Paul Shannon
    • [BioC] Quick questions about RCytoscape   Ricardo Silva
      • [BioC] Quick questions about RCytoscape   Paul Shannon
• [BioC] Is GO.db out of date?   konika chawla
  • [BioC] Is GO.db out of date?   Marc Carlson
  • [BioC] Is GO.db out of date?   konika chawla
    • [BioC] Is GO.db out of date?   Steve Lianoglou
    • [BioC] Is GO.db out of date?   Marc Carlson
• [BioC] DEXseq: transcript plot   Vincenzo Capece
• [BioC] Why Gene Set Enrichment results of two data set of the same disease are very different?   Feng Tian
  • [BioC] Why Gene Set Enrichment results of two data set of the same disease are very different?   Sean Davis
• [BioC] edgeR Warings   Tongwu [guest]
  • [BioC] edgeR Warings   Mark Robinson
• [BioC] Segfault in MEDIPS MEDIPS.methylProfiling() with ROI file   Stephen Turner
  • [BioC] Segfault in MEDIPS MEDIPS.methylProfiling() with ROI file   Lukas Chavez
• [BioC] GRanges error - Error: identical(colnames(classinfo), colnames(out)) is not TRUE   Richard Birnie [guest]
• [BioC] [Solved] GRanges error - Error: identical(colnames(classinfo), colnames(out)) is not TRUE   Richard Birnie
• [BioC] Illumina Human 6 V1 expression annotation file   Jinyan Huang
• [BioC] ctc::hc2Newick branch length errors?   Narayanan, Manikandan (NIH/NIAID) [E]
• [BioC] assignChromosomeRegion in 2.6.0 ChIPpeakAnno   Zhu, Lihua (Julie)
  • [BioC] assignChromosomeRegion in 2.6.0 ChIPpeakAnno   Zhu, Lihua (Julie)
    • [BioC] assignChromosomeRegion in 2.6.0 ChIPpeakAnno   Stefan Pinter
  • [BioC] assignChromosomeRegion in 2.6.0 ChIPpeakAnno   Zhu, Lihua (Julie)
    • [BioC] assignChromosomeRegion in 2.6.0 ChIPpeakAnno   Stefan Pinter
  • [BioC] assignChromosomeRegion in 2.6.0 ChIPpeakAnno   Zhu, Lihua (Julie)
    • [BioC] assignChromosomeRegion in 2.6.0 ChIPpeakAnno   Stefan Pinter
  • [BioC] assignChromosomeRegion in 2.6.0 ChIPpeakAnno   Zhu, Lihua (Julie)
    • [BioC] assignChromosomeRegion in 2.6.0 ChIPpeakAnno   Stefan Pinter
  • [BioC] assignChromosomeRegion in 2.6.0 ChIPpeakAnno   Zhu, Lihua (Julie)
  • [BioC] assignChromosomeRegion in 2.6.0 ChIPpeakAnno   Zhu, Lihua (Julie)
• [BioC] Gene symbol update.   Jinyan Huang
  • [BioC] Gene symbol update.   Marc Carlson
    • [BioC] Gene symbol update.   Jinyan Huang
      • [BioC] Gene symbol update.   Jinyan Huang
• [BioC] makeTranscriptDbFromBiomart - chrominfo failure   Stefanie Tauber
  • [BioC] makeTranscriptDbFromBiomart - chrominfo failure   Marc Carlson
• [BioC] Difference between EdgeR and DeSeq in library normalization   Lucia Peixoto
  • [BioC] Difference between EdgeR and DeSeq in library normalization   Simon Anders
    • [BioC] Difference between EdgeR and DeSeq in library normalization   Ryan C. Thompson
• [BioC] BioC2013, July 18-19 (Developer Day July 17), Seattle: Registration Open   Martin Morgan
• [BioC] MCS & ChemineR   Thomas Girke
• [BioC] DESeq pairwise comparisons between conditions within a multi-factor design   Andrew Lysaght
  • [BioC] DESeq pairwise comparisons between conditions within a multi-factor design   Simon Anders
• [BioC] R crashes when calling readCelFile in Starr package   Koh, Fong Ming
  • [BioC] R crashes when calling readCelFile in Starr package   Henrik Bengtsson
    • [BioC] R crashes when calling readCelFile in Starr package   Koh, Fong Ming
• [BioC] ChIPpeakAnno   Zhu, Lihua (Julie)
  • [BioC] ChIPpeakAnno   Zhu, Lihua (Julie)
  • [BioC] ChIPpeakAnno   Zhu, Lihua (Julie)
• [BioC] Analysis inquiry for Affymetrix Human Exon ST1.0 array   Jeremy Ng
• [BioC] NCI 60 gene expression status   Alyaa Mahmoud
• [BioC] Can\'t read canine CEL file with ReadAffy()   Kaj Chokeshaiusaha [guest]
  • [BioC] Can\'t read canine CEL file with ReadAffy()   James W. MacDonald
  • [BioC] Can\'t read canine CEL file with ReadAffy()   Kaj
• [BioC] MT reference differences between hg19/GRCH37   Julian Gehring
  • [BioC] MT reference differences between hg19/GRCH37   Julian Gehring
    • [BioC] MT reference differences between hg19/GRCH37   Hervé Pagès
• [BioC] edgeR for data combined from different studies and/or platforms   Santos [guest]
  • [BioC] edgeR for data combined from different studies and/or platforms   Ryan C. Thompson
    • [BioC] edgeR for data combined from different studies and/or platforms   Simon Anders
      • [BioC] edgeR for data combined from different studies and/or platforms   Ryan C. Thompson
    • [BioC] edgeR for data combined from different studies and/or platforms   Santosh Patnaik
      • [BioC] edgeR for data combined from different studies and/or platforms   Simon Anders
• [BioC] Question about limma pacakge   Marie DENIS
• [BioC] Fix for queryAE() in the ArrayExpress package   Ibrahim Emam
• [BioC] limma interaction model example   limmauser [guest]
  • [BioC] limma interaction model example   James W. MacDonald
• [BioC] I was wondering if anyone here was using SPP?   Thornton, Matthew
• [BioC] Large logCPM values when using offsets in edgeR for normalization   Ying Wu
  • [BioC] Large logCPM values when using offsets in edgeR for normalization   Gordon K Smyth
• [BioC] problem extracting non AFE data with Agi4x44PreProcessing package   Bernal-Mizrachi, Leon
• [BioC] Proper use of annotation package   Naxerova, Kamila
  • [BioC] Proper use of annotation package   James W. MacDonald
  • [BioC] Proper use of annotation package   Naxerova, Kamila
    • [BioC] Proper use of annotation package   James W. MacDonald
• [BioC] Distance btw sequences from different sets   Benilton Carvalho
  • [BioC] Distance btw sequences from different sets   Hervé Pagès
    • [BioC] Distance btw sequences from different sets   Kasper Daniel Hansen
      • [BioC] Distance btw sequences from different sets   Hervé Pagès
      • [BioC] Distance btw sequences from different sets   Benilton Carvalho
      • [BioC] Distance btw sequences from different sets   Benilton Carvalho
    • [BioC] Distance btw sequences from different sets   Benilton Carvalho
• [BioC] edgeR Quasi-likelihood with tagwise dispersion?   Ryan C. Thompson
  • [BioC] edgeR Quasi-likelihood with tagwise dispersion?   Gordon K Smyth
    • [BioC] edgeR Quasi-likelihood with tagwise dispersion?   Ryan C. Thompson
      • [BioC] edgeR Quasi-likelihood with tagwise dispersion?   Gordon K Smyth
• [BioC] how to use color to represent significant changed genes in maPlot of edgeR   Wang Peter
• some problems of easyRNASeqâ : about the gtf files   Hu Fuyan [guest]
  • [BioC] some problems of easyRNASeqâ : about the gtf files   Nicolas Delhomme
• [BioC] xzfile() cannot open the connection, lzma encoder error 5.   Wang Ming
  • [BioC] xzfile() cannot open the connection, lzma encoder error 5.   Guangchuang Yu
  • [BioC] xzfile() cannot open the connection, lzma encoder error 5.   Wang Ming
• [BioC] how to get the exon count by using htseq-count   Hu Fuyan [guest]
  • [BioC] how to get the exon count by using htseq-count   Simon Anders
• Unable to install package \"CAGEr\" - Warning message: package â CAGErâ is not available (for R version 2.15.3)   Arturo Mora [guest]
  • [BioC] Unable to install package \"CAGEr\" - Warning message: package ā CAGErā is not available (for R version 2.15.3)   Dan Tenenbaum
    • [BioC] Unable to install package   Arturo
      • [BioC] Unable to install package   Dan Tenenbaum
• [BioC] Annotation problem through org.Mm.eg.db   Himanshu Sharma
  • [BioC] FW: Annotation problem through org.Mm.eg.db   Himanshu Sharma
  • [BioC] Annotation problem through org.Mm.eg.db   Marc Carlson
• [BioC] Error in .testGOFrame(x, organism)   Diwan [guest]
  • [BioC] Error in .testGOFrame(x, organism)   Valerie Obenchain
• [BioC] error with retrieving dn and ds using biomart   David Wang
  • [BioC] error with retrieving dn and ds using biomart   James W. MacDonald
    • [BioC] error with retrieving dn and ds using biomart   David Wang
      • [BioC] error with retrieving dn and ds using biomart   James W. MacDonald
      • [BioC] error with retrieving dn and ds using biomart   Thomas Maurel
      • [BioC] edgeR strange normalized factor for RNAseq data   capricy gao
      • [BioC] edgeR strange normalized factor for RNAseq data   Mark Robinson
      • [BioC] edgeR strange normalized factor for RNAseq data   capricy gao
• Error in .testGOFraâ me(x, organism)   Diwan [guest]
• [BioC] Calculate Outer Positions of GappedAlignmentPairs   Dario Strbenac
  • [BioC] Calculate Outer Positions of GappedAlignmentPairs   Michael Lawrence
    • [BioC] Calculate Outer Positions of GappedAlignmentPairs   Valerie Obenchain
      • [BioC] Calculate Outer Positions of GappedAlignmentPairs   Michael Lawrence
      • [BioC] Calculate Outer Positions of GappedAlignmentPairs   Hervé Pagès
      • [BioC] Calculate Outer Positions of GappedAlignmentPairs   Hervé Pagès
      • [BioC] Calculate Outer Positions of GappedAlignmentPairs   Hervé Pagès
      • [BioC] Calculate Outer Positions of GappedAlignmentPairs   Michael Lawrence
      • [BioC] Calculate Outer Positions of GappedAlignmentPairs   Dario Strbenac
      • [BioC] Calculate Outer Positions of GappedAlignmentPairs   Kasper Daniel Hansen
      • [BioC] Calculate Outer Positions of GappedAlignmentPairs   Michael Lawrence
• [BioC] ChIPpeakAnno query   Zhu, Lihua (Julie)
  • [BioC] ChIPpeakAnno query   Luke Selth
    • [BioC] ChIPpeakAnno query   Zhu, Lihua (Julie)
• [BioC] 5000 nodes RCytoscape   Paul Shannon
  • [BioC] 5000 nodes RCytoscape   Paul Shannon
• [BioC] Applying DESeq on RSEM output   dvir.tau at gmail.com
  • [BioC] Applying DESeq on RSEM output   Michael Love
    • [BioC] Applying DESeq on RSEM output   dvir.tau at gmail.com
  • [BioC] Applying DESeq on RSEM output   Simon Anders
    • [BioC] Applying DESeq on RSEM output   Dvir Netanely
      • [BioC] Applying DESeq on RSEM output   Michael Love
• [BioC] about expression value generated by SCAN UPC package   gregory voisin
• [BioC] BiocGenerics 0.5.6 not loading properly   Seb
  • [BioC] BiocGenerics 0.5.6 not loading properly   Dan Tenenbaum
    • [BioC] BiocGenerics 0.5.6 not loading properly   Seb
      • [BioC] BiocGenerics 0.5.6 not loading properly   Dan Tenenbaum
      • [BioC] BiocGenerics 0.5.6 not loading properly   Seb
      • [BioC] BiocGenerics 0.5.6 not loading properly   Dan Tenenbaum
      • [BioC] BiocGenerics 0.5.6 not loading properly   Seb
      • [BioC] BiocGenerics 0.5.6 not loading properly   Dan Tenenbaum
      • [BioC] BiocGenerics 0.5.6 not loading properly   Seb
      • [BioC] BiocGenerics 0.5.6 not loading properly   Dan Tenenbaum
      • [BioC] BiocGenerics 0.5.6 not loading properly   Kasper Daniel Hansen
      • [BioC] BiocGenerics 0.5.6 not loading properly   Martin Morgan
      • [BioC] BiocGenerics 0.5.6 not loading properly   Kasper Daniel Hansen
      • [BioC] BiocGenerics 0.5.6 not loading properly   Seb
      • [BioC] BiocGenerics 0.5.6 not loading properly   Kasper Daniel Hansen
• [BioC] A question about GWASTools package   Stephanie M. Gogarten
• [BioC] EdgeR vs voom, what to consider when deciding which to use   Lucia Peixoto
  • [BioC] EdgeR vs voom, what to consider when deciding which to use   Steve Lianoglou
• [BioC] enrichment of GO terms based on input gene list   Joseph Nalluri [guest]
  • [BioC] enrichment of GO terms based on input gene list   Reema Singh
• [BioC] nsFilter give error saying \"invalid subscripts type \'list\'\"   Hao [guest]
• [BioC] Testing for no change in RNA-seq data?   Ryan C. Thompson
  • [BioC] Testing for no change in RNA-seq data?   Albyn Jones
    • [BioC] Testing for no change in RNA-seq data?   Ryan C. Thompson
  • [BioC] Testing for no change in RNA-seq data?   Simon Anders
    • [BioC] EdgeR: coefficients for GLM for multiple groups   capricy gao
      • [BioC] EdgeR: coefficients for GLM for multiple groups   James W. MacDonald
      • [BioC] EdgeR: coefficients for GLM for multiple groups   capricy gao
      • [BioC] EdgeR: coefficients for GLM for multiple groups   James W. MacDonald
      • [BioC] EdgeR: coefficients for GLM for multiple groups   capricy gao
      • [BioC] EdgeR: coefficients for GLM for multiple groups   James W. MacDonald
      • [BioC] EdgeR: coefficients for GLM for multiple groups   capricy gao
      • [BioC] EdgeR: coefficients for GLM for multiple groups   Moritz Hess
      • [BioC] EdgeR: coefficients for GLM for multiple groups   capricy gao
    • [BioC] Testing for no change in RNA-seq data?   Ryan C. Thompson
    • [BioC] Testing for no change in RNA-seq data?   Ryan C. Thompson
      • [BioC] Testing for no change in RNA-seq data?   Simon Anders
      • [BioC] Testing for no change in RNA-seq data?   Ryan C. Thompson
      • [BioC] Testing for no change in RNA-seq data?   Ryan C. Thompson
• [BioC] (minfi) Return value from dmpFinder   Subhashree
  • [BioC] (minfi) Return value from dmpFinder   Tim Triche, Jr.
• [BioC] Fragen zu Gviz   Hahne, Florian
• [BioC] GWASTools   Stephanie M. Gogarten
• [BioC] how to operate on a DNAStringSet object   Chris Seidel
  • [BioC] how to operate on a DNAStringSet object   Steve Lianoglou
    • [BioC] how to operate on a DNAStringSet object   Steve Lianoglou
      • [BioC] how to operate on a DNAStringSet object   Hervé Pagès
      • [BioC] how to operate on a DNAStringSet object   Steve Lianoglou
  • [BioC] how to operate on a DNAStringSet object   Chris Seidel
• [BioC] cmarrt.peak function does not work   Susan Wilson
• [BioC] DAVIDQuery   Grimes Mark
  • [BioC] DAVIDQuery   Day, Roger S
• [BioC] what is the difference between AssayTechnologies and AssayDomains   Wang Peter
  • [BioC] what is the difference between AssayTechnologies and AssayDomains   Steve Lianoglou
    • [BioC] what is the difference between AssayTechnologies and AssayDomains   Wang Peter
      • [BioC] what is the difference between AssayTechnologies and AssayDomains   Michl Mond
      • [BioC] what is the difference between AssayTechnologies and AssayDomains   Wang Peter
• [BioC] col.summary error in snpStats   Tereza Jezkova - personal
  • [BioC] col.summary error in snpStats   Vincent Carey
• [BioC] edgeR: glmLRT test   KJ Lim
  • [BioC] edgeR: glmLRT test   James W. MacDonald
    • [BioC] edgeR: glmLRT test   KJ Lim
      • [BioC] edgeR: glmLRT test   James W. MacDonald
      • [BioC] edgeR: glmLRT test   KJ Lim
      • [BioC] edgeR: glmLRT test   KJ Lim
      • [BioC] edgeR: glmLRT test   James W. MacDonald
      • [BioC] edgeR: glmLRT test   KJ Lim
• [BioC] Problem loading the "affxparser" dependency of the "oligo" package.   Russell Williams
  • [BioC] Problem loading the "affxparser" dependency of the "oligo" package.   Henrik Bengtsson
    • [BioC] Problem loading the "affxparser" dependency of the "oligo" package.   Henrik Bengtsson
      • [BioC] Problem loading the "affxparser" dependency of the "oligo" package.   Russell Williams
      • [BioC] Problem loading the "affxparser" dependency of the "oligo" package.   Henrik Bengtsson
• [BioC] introductory book   washington3 at countermail.com
  • [BioC] introductory book   James W. MacDonald
    • [BioC] introductory book   zeynep özkeserli
• [BioC] Multifactor analysis with deseq   Michael Muratet
  • [BioC] Multifactor analysis with deseq   Simon Anders
    • [BioC] Multifactor analysis with deseq   Simon Anders
      • [BioC] DEXSeq html report error   Natasha Sahgal
      • [BioC] DEXSeq html report error   Alejandro Reyes
    • [BioC] Multifactor analysis with deseq   Simon Anders
      • [BioC] Multifactor analysis with deseq   Michael Muratet
      • [BioC] Multifactor analysis with deseq   Michael Love
      • [BioC] Multifactor analysis with deseq   Michael Love
      • [BioC] Multifactor analysis with deseq   Michael Muratet
      • [BioC] Multifactor analysis with deseq   Michael Love
• [BioC] slow query   Sean Wang [guest]
  • [BioC] slow query   Marc Carlson
  • [BioC] slow query   Marc Carlson
• [BioC] A question about the gage package   He, Yiwen (NIH/CIT) [C]
  • [BioC] A question about the gage package   He, Yiwen (NIH/CIT) [C]
    • [BioC] A question about the gage package   James W. MacDonald
• [BioC] AssignChromosomeRegion in ChIPpeakAnno 2.7.3   Zhu, Lihua (Julie)
• [BioC] EdgeR-tophat   Asma rabe
  • [BioC] Fwd: EdgeR-tophat   Asma rabe
    • [BioC] Fwd: EdgeR-tophat   Steve Lianoglou
• [BioC] CAMDA 2013 Challenge: Big Data in Life Sciences   CAMDA 2013
• [BioC] WORLDCOMP fake conference   washington3 at countermail.com
• [BioC] enquiry about the limma script   yong li
  • [BioC] enquiry about the limma script   Gordon K Smyth
• [BioC] Visualize metabolic network using table with reactions   Denis Kazakiewicz
• [BioC] Subsetting vcf file by subject   Taub, Margaret
  • [BioC] Subsetting vcf file by subject   Valerie Obenchain
• [BioC] Alternative to combineAffybatch   Nicolas Servant
• [BioC] cummerBund - how to get splicing events   Adrian Johnson
  • [BioC] cummerBund - how to get splicing events   Valerie Obenchain
• [BioC] Background for test in SPIA package.   Ian Sudbery
• [BioC] installing Rdisop   Lin [guest]
  • [BioC] installing Rdisop   Dan Tenenbaum
    • [BioC] installing Rdisop   C Lin
• [BioC] EdgeR multi-factor design questions   Morgan Mouchka
  • [BioC] EdgeR multi-factor design questions   James W. MacDonald
    • [BioC] EdgeR multi-factor design questions   Morgan Mouchka
      • [BioC] EdgeR multi-factor design questions   James W. MacDonald
      • [BioC] EdgeR multi-factor design questions   Morgan Mouchka
• [BioC] Estimate how much a factor contributes to the variation   Robert Svensen
  • [BioC] Estimate how much a factor contributes to the variation   Paul Geeleher
  • [BioC] Estimate how much a factor contributes to the variation   Hooiveld, Guido
• [BioC] [Fwd: RE: Rdisop]   Dan Tenenbaum
• [BioC] BitSeq getExpression crash   Maayan Kreitzman
  • [BioC] BitSeq getExpression crash   Peter Glaus
• [BioC] Annotating Illumina Mouse Ref8 array in BRB   Tejas Tirodkar
• [BioC] xps- not being able to load it   Andreia Fonseca
  • [BioC] xps- not being able to load it   Steve Lianoglou
  • [BioC] xps- not being able to load it   cstrato
    • [BioC] xps- not being able to load it   Andreia Fonseca
      • [BioC] xps- not being able to load it   Andreia Fonseca
      • [BioC] xps- not being able to load it   cstrato
      • [BioC] xps- not being able to load it   Andreia Fonseca
      • [BioC] xps- not being able to load it   cstrato
      • [BioC] xps- not being able to load it   Andreia Fonseca
      • [BioC] xps- not being able to load it   cstrato
• [BioC] Analyzing "differential variability" of methylation (and gene expression)   Simone
  • [BioC] Analyzing "differential variability" of methylation (and gene expression)   Pekka Kohonen
    • [BioC] Analyzing "differential variability" of methylation (and gene expression)   Tim Triche, Jr.
• [BioC] GSOC 2013?   Toby Dylan Hocking [guest]
• [BioC] barcode with custom CDF   Dario Greco [guest]
  • [BioC] barcode with custom CDF   Matthew McCall
    • [BioC] barcode with custom CDF   Dario Greco
      • [BioC] barcode with custom CDF   Matthew McCall
      • [BioC] barcode with custom CDF   Hooiveld, Guido
      • [BioC] barcode with custom CDF   Matthew McCall
  • [BioC] barcode with custom CDF   Steve Piccolo
• [BioC] duplicate 'row.names' are not allowed from biocLite.R   Pawel Eljasz
  • [BioC] duplicate 'row.names' are not allowed from biocLite.R   Pawel Eljasz
    • [BioC] duplicate 'row.names' are not allowed from biocLite.R   Valerie Obenchain
      • [BioC] duplicate 'row.names' are not allowed from biocLite.R   Dan Tenenbaum
• [BioC] Finding mismatches between reads and reference sequence   David Greber
• [BioC] Is it possible to get SRA sample attributes for a given sample or experiment ID?   Vladimir Morozov
• [BioC] Help with EdgeR running error   Chia Jing Yi
• [BioC] mzR crashes R   Lin [guest]
  • [BioC] mzR crashes R   Laurent Gatto
    • [BioC] mzR crashes R   Dan Tenenbaum
      • [BioC] mzR crashes R   Laurent Gatto
      • [BioC] mzR crashes R   C Lin
      • [BioC] mzR crashes R   Dan Tenenbaum
      • [BioC] mzR crashes R   C Lin
      • [BioC] mzR crashes R   Dan Tenenbaum
      • [BioC] mzR crashes R   Dan Tenenbaum
      • [BioC] mzR crashes R   Laurent Gatto
      • [BioC] mzR crashes R   C Lin
      • [BioC] mzR crashes R   Laurent Gatto
• [BioC] Error when installing globaltest package   Shields, Rusty (IMS)
• [BioC] Question about VennDiagram package   Findley Finseth
  • [BioC] Question about VennDiagram package   Dan Tenenbaum
  • [BioC] Question about VennDiagram package   Steve Lianoglou
• [BioC] unable to load xcms package, Rcpp error   lun wang [guest]
  • [BioC] unable to load xcms package, Rcpp error   Steve Lianoglou
  • [BioC] unable to load xcms package, Rcpp error   Dan Tenenbaum
• [BioC] sva: No significant surrogate variables   Shraddha Pai
• [BioC] two color arrays, LIMMA and GOstats analysis   Andreas Heider
• [BioC] BED2RangedData   R [guest]
  • [BioC] BED2RangedData   Ou, Jianhong
    • [BioC] BED2RangedData   R
      • [BioC] BED2RangedData   Zhu, Lihua (Julie)
      • [BioC] BED2RangedData   Ou, Jianhong
      • [BioC] BED2RangedData   Michael Lawrence
      • [BioC] BED2RangedData   Michael Lawrence
• [BioC] Job: Bioinformatician (postdoc, indefinite) Pirbright Institute   Jan T Kim
• [BioC] Exon Arrays - GC & how many pm features?   Jonathan Cairns
• [BioC] applyPileups invalid times argument error   Mark Dunning
  • [BioC] applyPileups invalid times argument error   Martin Morgan
• [BioC] BSgenome.Dmelanogaster.UCSC.dm3 package for R 3.0.0 beta?   ying chen
  • [BioC] BSgenome.Dmelanogaster.UCSC.dm3 package for R 3.0.0 beta?   ying chen
  • [BioC] BSgenome.Dmelanogaster.UCSC.dm3 package for R 3.0.0 beta?   James W. MacDonald
• [BioC] general question about sample replicates   Fix Ace
• [BioC] Limit on number of sequence files for forging a BSgenome   Blanchette, Marco
  • [BioC] Limit on number of sequence files for forging a BSgenome   Kasper Daniel Hansen
    • [BioC] Limit on number of sequence files for forging a BSgenome   Blanchette, Marco
      • [BioC] Limit on number of sequence files for forging a BSgenome   Blanchette, Marco
      • [BioC] Limit on number of sequence files for forging a BSgenome   Cook, Malcolm
• [BioC] rGADEM crash   Lakshmanan Iyer
  • [BioC] rGADEM crash   Dan Tenenbaum
    • [BioC] rGADEM crash   Lakshmanan Iyer
• [BioC] shared object ‘mzR.so’ not found after mzR update   Alejandra Gonzalez-Beltran
  • [BioC] shared object ‘mzR.so’ not found after mzR update   Steve Lianoglou
    • [BioC] shared object ‘mzR.so’ not found after mzR update   Alejandra Gonzalez-Beltran
• [BioC] Heatmaps for Agilent Single Color 4x44k using limma and vsn.   Cornish, Joseph (NIH/NIAID) [F]
  • [BioC] Heatmaps for Agilent Single Color 4x44k using limma and vsn.   James W. MacDonald
    • [BioC] Heatmaps for Agilent Single Color 4x44k using limma and vsn.   Cornish, Joseph (NIH/NIAID) [F]
      • [BioC] Heatmaps for Agilent Single Color 4x44k using limma and vsn.   Sean Davis
      • [BioC] Heatmaps for Agilent Single Color 4x44k using limma and vsn.   Cornish, Joseph (NIH/NIAID) [F]
      • [BioC] Heatmaps for Agilent Single Color 4x44k using limma and vsn.   Sean Davis
      • [BioC] Heatmaps for Agilent Single Color 4x44k using limma and vsn.   James W. MacDonald
• [BioC] analysis of HuGene2.0-st array affymetrix -aroma package   Andreia Fonseca
• [BioC] Interpreting DESeq2 results   Michael Muratet
  • [BioC] Interpreting DESeq2 results   Michael Love
    • [BioC] Interpreting DESeq2 results   somnath bandyopadhyay
• [BioC] identifying drosophila miRNA targets   Fiona Ingleby
  • [BioC] identifying drosophila miRNA targets   James W. MacDonald
    • [BioC] identifying drosophila miRNA targets   Fiona Ingleby
      • [BioC] identifying drosophila miRNA targets   James W. MacDonald
      • [BioC] identifying drosophila miRNA targets   James W. MacDonald
• [BioC] [R] Error in setMethod("combine"... was - Error when installing globaltest package   Shields, Rusty (IMS)
  • [BioC] [R] Error in setMethod("combine"... was - Error when installing globaltest package   Martin Morgan
    • [BioC] [R] Error in setMethod("combine"... was - Error when installing globaltest package   Shields, Rusty (IMS)
• [BioC] Problems in running easyRNASeq   pepap
• [BioC] diffbind   Rory Stark
• [BioC] simple ggplot   R [guest]
  • [BioC] simple ggplot   Sean Davis
• [BioC] Bioconductor Digest, Vol 121, Issue 29   Thornton, Matthew
• [BioC] GO terms: Annotation for HumanMethylation450   Fabrice Tourre
  • [BioC] GO terms: Annotation for HumanMethylation450   Tim Triche, Jr.
    • [BioC] GO terms: Annotation for HumanMethylation450   Fabrice Tourre
• [BioC] .::Gregory Gentlemen::.   Gregory Gentlemen
• [BioC] subscript out of bounds in makeAnnDbPkg function   Wang Peter
• [BioC] list submission   Edmundo Vega

Last message date: Sun Mar 31 22:16:54 CEST 2013
Archived on: Sun Mar 31 22:17:39 CEST 2013

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