Error in .testGOFraâ me(x, organism)

Diwan [guest] guest at
Tue Mar 19 20:06:45 CET 2013

Hi Valerie,

Thank you.Now I am able to use GOframe without any error. 

Initially I installed the “AnnotationDbi” and I assumed that ‘biocLite("AnnotationDbi")’ will install the latest version.  
> source("")
> biocLite("AnnotationDbi")
Using R version 2.15, BiocInstaller version 1.4.9.
Installing package(s) 'AnnotationDbi'
trying URL ''

But I was using Bioconductor version 2.10 . I am able to install AnnotationDbi 1.20.7 after upgrading to version 2.11. I also updated the other older packages 
'Biobase', 'GO.db', 'GSEABase', ''. Now I don't get any error. 

Thank you for your time and help.


 -- output of sessionInfo(): 

R version 2.15.2 (2012-10-26)
Platform: x86_64-redhat-linux-gnu (64-bit)

 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8    LC_PAPER=C                 LC_NAME=C                 

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] BiocInstaller_1.8.3  KEGG.db_2.8.0        GSEABase_1.20.2      rat2302.db_2.8.1  
 [6] annotate_1.36.0      GOstats_2.24.0       graph_1.34.0         Category_2.24.0      GO.db_2.8.0         
[11] RSQLite_0.11.2       DBI_0.2-5            AnnotationDbi_1.20.7 Biobase_2.18.0       BiocGenerics_0.4.0  

loaded via a namespace (and not attached):
 [1] AnnotationForge_1.0.3 genefilter_1.38.0     IRanges_1.16.6        parallel_2.15.2       RBGL_1.34.0          
 [6] splines_2.15.2        stats4_2.15.2         survival_2.37-4       tools_2.15.2          XML_3.95-0.2         
[11] xtable_1.7-1

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