[BioC] mzR crashes R

[Laurent Gatto]

On 26 March 2013 19:13, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
> On Tue, Mar 26, 2013 at 9:07 AM, Laurent Gatto <lg390 at cam.ac.uk> wrote:
>> Dear Lin,
>>
>> I forgot to update the release version of mzR to match Rcpp 0.10.3 and
>> commits to Bioc 2.11 are now disabled. A new version of mzR addressing
>> this will be available next week with the next Bioc release.
>
> I've pushed mzR 1.4.7 to the BioC 2.11 repository, so it can now be
> installed with
> biocLite("mzR")
> on systems running R-2.15.x and Bioconductor 2.11.

Thanks for this, Dan!

Laurent

> Thanks,
> Dan
>
>
>>  In the
>> mean time, you could either stick with Rcpp 0.10.2 or install mzR
>> v1.5.9 [1], which is the current devel version (and will become the
>> next stable release in one week). I have not tested the latter, so
>> there might be other unexpected incompatibilities that show up.
>>
>> Let us know if this works of need any further help.
>>
>> Sorry for the inconvenience.
>>
>> Best wishes,
>>
>> Laurent
>>
>>
>> [1] http://bioconductor.org/packages/2.12/bioc/html/mzR.html
>>
>>
>> On 26 March 2013 15:39, Lin [guest] <guest at bioconductor.org> wrote:
>>>
>>> Hi all,
>>>
>>> Everytime I tried to run "library(mzR)" my R crashes. I tried to search through the mailing and found out that this seemed to be the problem of incompatibility between Rcpp and mzR. My Rcpp is 0.10.3 and the current mzR version is 1.4.6. How do I fix it?
>>>
>>> Alternatively, I think I should be able to install older version of Rcpp and mzR but I don't know which version I should install and how to install archieved version on windows.
>>>
>>> Thanks in advance for your help.
>>> Lin
>>>
>>>  -- output of sessionInfo():
>>>
>>> R version 2.15.1 (2012-06-22)
>>> Platform: x86_64-pc-mingw32/x64 (64-bit)
>>>
>>> locale:
>>> [1] LC_COLLATE=English_United States.1252
>>> [2] LC_CTYPE=English_United States.1252
>>> [3] LC_MONETARY=English_United States.1252
>>> [4] LC_NUMERIC=C
>>> [5] LC_TIME=English_United States.1252
>>>
>>> attached base packages:
>>> [1] grDevices datasets  splines   graphics  stats     tcltk     utils
>>> [8] methods   base
>>>
>>> other attached packages:
>>> [1] Rcpp_0.10.3     svSocket_0.9-54 TinnR_1.0-5     R2HTML_2.2
>>> [5] Hmisc_3.10-1    survival_2.37-4
>>>
>>> loaded via a namespace (and not attached):
>>> [1] cluster_1.14.3  grid_2.15.1     lattice_0.20-15 svMisc_0.9-69
>>> [5] tools_2.15.1
>>>
>>>
>>> --
>>> Sent via the guest posting facility at bioconductor.org.
>>>
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>>
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--
Laurent Gatto
- http://proteome.sysbiol.cam.ac.uk/lgatto/
Cambridge Centre for Proteomics
- http://www.bio.cam.ac.uk/proteomics