[BioC] Question about VennDiagram package
Findley Finseth
findleyransler at gmail.com
Tue Mar 26 21:46:02 CET 2013
Hello all --
I have successfully used the VennDiagram Package several times to make quite attractive (at least in my opinion) VennDiagrams. Now, I am trying to make new VennDiagrams with new data (on an updated version of R) and am having an issue. I can't find the output file (i.e., the "VennDiagram"). In the past, the file has been written to the working directory, but they are not there. I have searched everywhere I can think to look (home directory, the entire computer) and no luck.
I have attached the code from the example from the paper, as this code also produces no find-able file. Has anyone been able to successfully produce VennDiagrams (that they can find) using VennDiagram in R 2.15.2? Also, I am implementing this in RStudio, but have also had the same problem from the old R console. Any advice?
Thanks,
Findley Finseth
PhD Candidate
Cornell University
> setwd("~/")
> library(VennDiagram);
Loading required package: grid
>
> # Figure 1A
> venn.diagram(
+ x = list(
+ Label = 1:100
+ ),
+ filename = "1A-single_Venn.tiff",
+ col = "black",
+ lwd = 9,
+ fontface = "bold",
+ fill = "grey",
+ alpha = 0.75,
+ cex = 4,
+ cat.cex = 3,
+ cat.fontface = "bold",
+ );
[1] 1
>
> sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] grid stats graphics grDevices utils datasets methods base
other attached packages:
[1] VennDiagram_1.5.1
loaded via a namespace (and not attached):
[1] colorspace_1.2-1 dichromat_2.0-0 digest_0.6.3 ggplot2_0.9.3.1
[5] gtable_0.1.2 labeling_0.1 MASS_7.3-23 munsell_0.4
[9] plyr_1.8 proto_0.3-10 RColorBrewer_1.0-5 reshape2_1.2.2
[13] scales_0.2.3 stringr_0.6.2 tools_2.15.2
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