[BioC] make check with Biobase 2.18.0

[Martin Morgan]

On 03/08/2013 11:57 AM, Dan Tenenbaum wrote:
> On Fri, Mar 8, 2013 at 11:53 AM, Nigel Horne <nigel_horne at hotmail.com> wrote:
>>
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>> Folks,
>>
>>
>> I'm new to biobase and have been asked to install it on behalf of a
>> programmer.
>>
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>> The checking stage is failing with the following error:
>>
>>
>> ### Name: cache
>> ### Title: Evaluate an expression if its value is not already cached.
>> ### Aliases: cache
>> ### Keywords: manip array
>>
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>> ### ** Examples
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>>       bigCalc <- function() runif(10)
>>       cache(myComplicatedObject <- bigCalc())
>> Error in file.path(dir, paste0(prefix, name, ".RData")) :
>>    could not find function "paste0"
>>
>>
>>
>>
>> What is wrong and how do I fix it?  This is on CentOS6.3.
>> Sorry if you've seen more than one copy of this, but I don't know that my postings are getting through so I'm now trying with a different e-mail address.
>>
>
> Can you send your sessionInfo()?
>
> My guess is your version of R is too old--Biobase 2.18.0 requires R 2.15.

Also the recommended route to installing packages, without worrying about 
dependencies, is just

   source("http://bioconductor.org/biocLite.R")
   biocLite("Biobase")

>
> Dan
>
>
>
>>
>> Regards,
>>
>>
>> -Nigel
>>
>>
>> --
>> Nigel Horne (NIH, Bethesda, MD, USA)
>> http://www.ncbi.nlm.nih.gov/
>>          [[alternative HTML version deleted]]
>>
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>
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