[BioC] options on outputing gene expression based on gene level instead of probe set level for justRMA

James W. MacDonald jmacdon at uw.edu
Wed Mar 6 20:53:55 CET 2013

Hi Jack,

On 3/6/2013 11:48 AM, Jack Luo wrote:
> Hi,
> I am trying to RMA normalize a bunch of cel files and output the gene

A bunch of cel files of what Array type?

> expression matrix to gene level (instead of probe set level), is there any
> option in justRMA that can do this (or any other function that can do
> this?) I searched the options on justRMA, does not seem to have this
> option.
> Thanks,
> -Jack
> 	[[alternative HTML version deleted]]
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James W. MacDonald, M.S.
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099

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