[BioC] installing Rdisop

[Dan Tenenbaum]

On Mon, Mar 25, 2013 at 12:05 PM, Lin [guest] <guest at bioconductor.org> wrote:
>
> Hello,
>
> I am trying to install Rdisop but got the following error which I thought meant the package was looking for older version of Rcpp that is not there anymore. Anyone knows how to fix this? Thank you.
>
>>     source("http://bioconductor.org/biocLite.R")
>>     biocLite("Rdisop")
> BioC_mirror: http://bioconductor.org
> Using R version 2.15, BiocInstaller version 1.4.9.
> Installing package(s) 'Rdisop'
> also installing the dependency ‘Rcpp’
>
> trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.15/Rcpp_0.10.2.zip'
> Error in download.file(url, destfile, method, mode = "wb", ...) :
>   cannot open URL 'http://cran.fhcrc.org/bin/windows/contrib/2.15/Rcpp_0.10.2.zip'


Start with a fresh R session.
You should be getting Rcpp_0.10.3, not 0.10.2.
In a fresh R session, type:

source("http://bioconductor.org/biocLite.R")
biocLite("Rcpp")

If that works, try
biocLite("Rdisop")

If it doesn't work, send us the output of your commands.

Dan



> In addition: Warning message:
> In download.file(url, destfile, method, mode = "wb", ...) :
>   cannot open: HTTP status was '404 Not Found'
> Warning in download.packages(pkgs, destdir = tmpd, available = available,  :
>   download of package ‘Rcpp’ failed
> trying URL 'http://bioconductor.org/packages/2.10/bioc/bin/windows/contrib/2.15/Rdisop_1.16.0.zip'
> Content type 'application/zip' length 923472 bytes (901 Kb)
> opened URL
> downloaded 901 Kb
>
> package ‘Rdisop’ successfully unpacked and MD5 sums checked
>
>> library(Rdisop)
> Loading required package: RcppClassic
> Error in gzfile(file, "rb") : cannot open the connection
>
>
>  -- output of sessionInfo():
>
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-pc-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252
> [2] LC_CTYPE=English_United States.1252
> [3] LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] grDevices datasets  splines   graphics  stats     tcltk     utils
> [8] methods   base
>
> other attached packages:
> [1] svSocket_0.9-54  TinnR_1.0-5      R2HTML_2.2       Hmisc_3.9-3
> [5] survival_2.36-14
>
> loaded via a namespace (and not attached):
> [1] cluster_1.14.2 grid_2.15.1    lattice_0.20-6 svMisc_0.9-68  tools_2.15.1
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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