[BioC] cummerBund - how to get splicing events

Valerie Obenchain vobencha at fhcrc.org
Tue Mar 26 18:10:58 CET 2013


Please provide more information about what you have tried and what you 
want to do. Which cummerBund vignette are you following (User Guide or 
Workflow)? It looks like Workflow section 7 is intended to cover 
differential splicing. Is this what you are interested in?


On 03/25/2013 10:24 AM, Adrian Johnson wrote:
> Hi:
> In sample 1 (where 4 different conditions were analyzed using
> cufflinks), using cummberbund, how to get significant number of
> splicing events? Any other way to do this. Appreciate your help!
> thanks
> Adrian
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