[BioC] rGADEM crash

Lakshmanan Iyer liyer01 at tufts.edu
Wed Mar 27 21:53:19 CET 2013


I am trying to rGADEM on a few sequences in FASTA format and it
crashes with the following error:

> gadem <- GADEM (Sequences, verbose=1)
*** Start C Programm ***
bit calloc failed!

Any help appreciated!
> sessionInfo()
R version 2.15.0 (2012-03-30)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=C                 LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] rGADEM_2.6.0         seqLogo_1.24.0       BSgenome_1.26.1
[4] GenomicRanges_1.10.7 Biostrings_2.26.3    IRanges_1.16.6
[7] BiocGenerics_0.4.0

loaded via a namespace (and not attached):
[1] parallel_2.15.0 stats4_2.15.0

-best
-Lax



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