[BioC] rGADEM crash
Lakshmanan Iyer
liyer01 at tufts.edu
Wed Mar 27 21:53:19 CET 2013
I am trying to rGADEM on a few sequences in FASTA format and it
crashes with the following error:
> gadem <- GADEM (Sequences, verbose=1)
*** Start C Programm ***
bit calloc failed!
Any help appreciated!
> sessionInfo()
R version 2.15.0 (2012-03-30)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] grid stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] rGADEM_2.6.0 seqLogo_1.24.0 BSgenome_1.26.1
[4] GenomicRanges_1.10.7 Biostrings_2.26.3 IRanges_1.16.6
[7] BiocGenerics_0.4.0
loaded via a namespace (and not attached):
[1] parallel_2.15.0 stats4_2.15.0
-best
-Lax
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