[BioC] Can\'t read canine CEL file with ReadAffy()
Kaj Chokeshaiusaha [guest]
guest at bioconductor.org
Sun Mar 17 11:25:16 CET 2013
Dear R helpers,
I would like to note in the first place that I'm very naive to R. So I must apologize you all in advance if my problem is too simple. Hope you will accept my apology.
I can't read CEL files of canine bone cancers with 'ReadAffy()'.
Would you please suggest me what happens and what I should try next?
R shows me this error
Error in read.affybatch(filenames = l$filenames, phenoData = l$phenoData, :
Cel file D:/Canine Osteosarcoma/GSM596543.CEL does not seem to have the correct dimensions
-- output of sessionInfo():
R version 2.15.1 (2012-06-22)
Platform: x86_64-pc-mingw32/x64 (64-bit)
 LC_COLLATE=Thai_Thailand.874 LC_CTYPE=Thai_Thailand.874
 LC_MONETARY=Thai_Thailand.874 LC_NUMERIC=C
attached base packages:
 stats graphics grDevices utils datasets methods base
other attached packages:
 affy_1.36.1 Biobase_2.18.0 BiocGenerics_0.4.0
loaded via a namespace (and not attached):
 affyio_1.26.0 BiocInstaller_1.8.3 preprocessCore_1.20.0
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