[BioC] Cannot connect to unimart using biomaRt
Dana Pascovici [guest]
guest at bioconductor.org
Wed Mar 6 05:17:03 CET 2013
Hi,
I can no longer connect to the uniprot biomart as below; I imagine it has something to do with the Biomart 0.8 release, but could not find any information. Would you be able to offer any suggestions, or know of any planned outages?
Many thanks in advance,
Dana
> uniProt <- useMart("unimart")
Error in read.table(con, sep = "\t", header = FALSE, quote = "", comment.char = "", :
no lines available in input
-- output of sessionInfo():
> sessionInfo()
R version 2.14.2 (2012-02-29)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_Australia.1252 LC_CTYPE=English_Australia.1252 LC_MONETARY=English_Australia.1252
[4] LC_NUMERIC=C LC_TIME=English_Australia.1252
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] biomaRt_2.10.0 BiocInstaller_1.2.1 rcom_2.2-3.1.1 rscproxy_1.3-1
loaded via a namespace (and not attached):
[1] fortunes_1.5-0 RCurl_1.91-1.1 tools_2.14.2 XML_3.95-0.1
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