[BioC] flowQ loading error after installing ImageMagick

Harris A. Jaffee hj at jhu.edu
Tue Mar 5 17:31:12 CET 2013 

I haven't been listening too closely, but...

Exactly what you wrote would have been a bash/sh syntax error.  There cannot be spaces around the '='.  If
you are on the right track, then you need something like

	PATH=$PATH:opt/local/bin

While we are at it, I believe that resetting a variable that is already exported, as with PATH, does not
necessitate the 'export' command, in order to reset the exported value.  For example,

sh-3.2$ export foo=bar
sh-3.2$ env | grep foo
foo=bar
sh-3.2$ foo=bar2
sh-3.2$ env | grep foo
foo=bar2


On Mar 5, 2013, at 11:11 AM, Chandra Jack wrote:

> I didn't have a ~/.profile so I created one. All I put in it was export PATH = $PATH:opt/local/bin. But I got the same message that /bin/sh: convert: command not found.  I read that .bash_profile may need to call .profile and also tried putting source ~/.profile at the end of the file but that gave me the same message.
> 
> 
> On Mar 5, 2013, at 9:41 AM, Dan Tenenbaum wrote:
> 
>> On Tue, Mar 5, 2013 at 12:21 AM, Nikolas Pontikos <n.pontikos at gmail.com> wrote:
>>> From your R error message, system is calling /bin/sh not /bin/bash (which
>>> should be the same program but i don't think sh reads the .bashrc config
>>> file).
>>> Maybe the convert command is not available from /bin/sh?
>> 
>> 
>> In that case the file to be edited is ~/.profile
>> 
>> Dan
>> 
>>> 
>>> 
>>> On 5 March 2013 06:42, Chandra Jack <chanj at rice.edu> wrote:
>>>> 
>>>> Yes. I've been restarting R after everytime I changed bash_profile. I also
>>>> just tried reinstalling R but that didn't help either.
>>>> 
>>>> On Mar 5, 2013, at 12:20 AM, Dan Tenenbaum wrote:
>>>> 
>>>>> On Mon, Mar 4, 2013 at 10:06 PM, Chandra Jack <chanj at rice.edu> wrote:
>>>>>> 
>>>>>> On Mar 4, 2013, at 11:57 PM, Dan Tenenbaum wrote:
>>>>>> 
>>>>>>> On Mon, Mar 4, 2013 at 9:53 PM, Chandra Jack <chanj at rice.edu> wrote:
>>>>>>>> Thank you so much for your help.
>>>>>>>> 
>>>>>>>> Chandra-Jacks-MacBook:~ chanj$ source ~/.bash_profile
>>>>>>>> Chandra-Jacks-MacBook:~ chanj$ echo $PATH
>>>>>>>> 
>>>>>>>> /Library/Frameworks/Python.framework/Versions/2.7/bin:/Library/Frameworks/EPD64.framework/Versions/Current/bin:/Library/Frameworks/Python.framework/Versions/2.7/bin:/Library/Frameworks/EPD64.framework/Versions/Current/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/opt/local/bin:/opt/local/bin
>>>>>>>> Chandra-Jacks-MacBook:~ chanj$ which convert
>>>>>>>> /opt/local/bin/convert
>>>>>>>> 
>>>>>>> 
>>>>>>> It looks like convert is in your PATH.
>>>>>>> 
>>>>>>> What happens if you type
>>>>>>> convert
>>>>>>> at the terminal prompt?
>>>>>> 
>>>>>> I think it opens ImageMagick
>>>>>> Chandra-Jacks-MacBook:~ chanj$ convert
>>>>>> Version: ImageMagick 6.8.0-7 2013-03-04 Q16 http://www.imagemagick.org
>>>>>> Copyright: Copyright (C) 1999-2012 ImageMagick Studio LLC
>>>>>> Features: OpenMP OpenCL
>>>>>> 
>>>>>> Usage: convert [options ...] file [ [options ...] file ...] [options
>>>>>> ...] file
>>>>>> 
>>>>>> Image Settings:
>>>>>> -adjoin              join images into a single multi-image file
>>>>>> 
>>>>>> etc....
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>>> 
>>>>>>> What if you go into R and type
>>>>>>> system("convert")
>>>>>>> ?
>>>>>>> 
>>>>>> system("convert")
>>>>>> /bin/sh: convert: command not found
>>>>>> 
>>>>> 
>>>>> This means convert is in your path but R can't see it. Did you restart
>>>>> R after editing .bash_profile?
>>>>> 
>>>>> Dan
>>>>> 
>>>>> 
>>>>>>> Dan
>>>>>>> 
>>>>>>>> On Mar 4, 2013, at 11:45 PM, Dan Tenenbaum wrote:
>>>>>>>> 
>>>>>>>>> On Mon, Mar 4, 2013 at 9:30 PM, Chandra Jack <chanj at rice.edu> wrote:
>>>>>>>>>> I replaced the original export line with the one you wrote but it
>>>>>>>>>> still
>>>>>>>>>> didn't work.
>>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> OK, at a terminal prompt, please enter the following commands and
>>>>>>>>> send
>>>>>>>>> me the output they produce:
>>>>>>>>> 
>>>>>>>>> source ~/.bash_profile
>>>>>>>>> echo $PATH
>>>>>>>>> which convert
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> thanks,
>>>>>>>>> Dan
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>>> On Mar 4, 2013, at 10:18 PM, Dan Tenenbaum wrote:
>>>>>>>>>> 
>>>>>>>>>> On Mon, Mar 4, 2013 at 8:07 PM, Chandra Jack <chanj at rice.edu>
>>>>>>>>>> wrote:
>>>>>>>>>> 
>>>>>>>>>> The convert command isn't in my PATH but adding the newIt doesn't
>>>>>>>>>> seem to be
>>>>>>>>>> working. I don't have a .bashrc file but I have a .bash_profile.
>>>>>>>>>> The
>>>>>>>>>> original file was:
>>>>>>>>>> 
>>>>>>>>>> # Setting PATH for EPD-7.1-2
>>>>>>>>>> 
>>>>>>>>>> # The orginal version is saved in .bash_profile.pysave
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> PATH="/Library/Frameworks/EPD64.framework/Versions/Current/bin:${PATH}"
>>>>>>>>>> 
>>>>>>>>>> export PATH
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> MKL_NUM_THREADS=1
>>>>>>>>>> 
>>>>>>>>>> export MKL_NUM_THREADS
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> # Setting PATH for Python 2.7
>>>>>>>>>> 
>>>>>>>>>> # The orginal version is saved in .bash_profile.pysave
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> PATH="/Library/Frameworks/Python.framework/Versions/2.7/bin:${PATH}"
>>>>>>>>>> 
>>>>>>>>>> export PATH
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> ##
>>>>>>>>>> 
>>>>>>>>>> # Your previous /Users/chanj/.bash_profile file was backed up as
>>>>>>>>>> /Users/chanj/.bash_profile.macports-saved_2013-03-04_at_14:30:35
>>>>>>>>>> 
>>>>>>>>>> ##
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> # MacPorts Installer addition on 2013-03-04_at_14:30:35: adding an
>>>>>>>>>> appropriate PATH variable for use with MacPorts.
>>>>>>>>>> 
>>>>>>>>>> export PATH=/opt/local/bin:/opt/local/sbin:$PATH
>>>>>>>>>> 
>>>>>>>>>> # Finished adapting your PATH environment variable for use with
>>>>>>>>>> MacPorts.
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> I added PATH=$PATH:/opt/local/bin after the export line, resaved
>>>>>>>>>> the text
>>>>>>>>>> edit file and quit the terminal. When I checked Terminal again the
>>>>>>>>>> file was
>>>>>>>>>> updated but R couldn't find the command still.
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Sorry, it needs to say:
>>>>>>>>>> 
>>>>>>>>>> export PATH=$PATH:/opt/local/bin
>>>>>>>>>> 
>>>>>>>>>> I forgot the 'export' before.
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> I also tried adding it before the export line, replacing the part
>>>>>>>>>> after the
>>>>>>>>>> export line with it, adding quotation marks but nothing seemed to
>>>>>>>>>> work.  I
>>>>>>>>>> went in and found the convert command file and it is in
>>>>>>>>>> opt/local/bin. I
>>>>>>>>>> tried Sys.which with another file that was in the same location and
>>>>>>>>>> R output
>>>>>>>>>> "/usr/bin/clear" .  Could it be related to the backup file that was
>>>>>>>>>> created
>>>>>>>>>> before I changed it?
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> No, that just means there is a 'clear' executable in two locations.
>>>>>>>>>> Dan
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Thanks
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> On Mar 4, 2013, at 4:15 PM, Dan Tenenbaum wrote:
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> On Mon, Mar 4, 2013 at 2:09 PM, Chandra Jack [guest]
>>>>>>>>>> 
>>>>>>>>>> <guest at bioconductor.org> wrote:
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Hi All,
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> I'm having a problem that has been mentioned here before but I'm
>>>>>>>>>> not sure
>>>>>>>>>> how to fix it. I tried to load flowQ and got:
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Error : .onAttach failed in attachNamespace() for 'flowQ', details:
>>>>>>>>>> 
>>>>>>>>>> call: mysys("convert -list configure", intern = TRUE, ignore.stderr
>>>>>>>>>> = TRUE)
>>>>>>>>>> 
>>>>>>>>>> error: error in running command
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Is the 'convert' command in your PATH?
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> What is the output of the R command:
>>>>>>>>>> 
>>>>>>>>>> Sys.which("convert")
>>>>>>>>>> 
>>>>>>>>>> ?
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> If it does not output anything, then the convert command is not in
>>>>>>>>>> your
>>>>>>>>>> PATH.
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> I'm not sure where the convert command ended up, but I'm guessing
>>>>>>>>>> it's
>>>>>>>>>> 
>>>>>>>>>> in /opt/local/bin,
>>>>>>>>>> 
>>>>>>>>>> so I think you need to edit your ~/.bashrc
>>>>>>>>>> 
>>>>>>>>>> file and add the following line:
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> PATH=$PATH:/opt/local/bin
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Then, start a new terminal window to make sure this setting is
>>>>>>>>>> 
>>>>>>>>>> enabled, and try again.
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Dan
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> In addition: Warning messages:
>>>>>>>>>> 
>>>>>>>>>> 1: replacing previous import Œplot‚ when loading Œgraphics‚
>>>>>>>>>> 
>>>>>>>>>> 2: replacing previous import Œas‚ when loading Œmethods‚
>>>>>>>>>> 
>>>>>>>>>> Error: package/namespace load failed for ŒflowQ‚.
>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> I have installed ImageMagick using Macports as has been suggested
>>>>>>>>>> and I have
>>>>>>>>>> also run
>>>>>>>>>> 
>>>>>>>>>> convert -list configure, which gave the following:
>>>>>>>>>> 
>>>>>>>>>> Path: /opt/local/lib/ImageMagick-6.8.0/config/configure.xml
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Name          Value
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> -------------------------------------------------------------------------------
>>>>>>>>>> 
>>>>>>>>>> CC            /usr/bin/gcc-4.2 -std=gnu99 -std=gnu99
>>>>>>>>>> 
>>>>>>>>>> CFLAGS        -D_THREAD_SAFE -D_THREAD_SAFE -pthread -fopenmp -pipe
>>>>>>>>>> -O2
>>>>>>>>>> -arch x86_64 -Wall -D_THREAD_SAFE -pthread
>>>>>>>>>> 
>>>>>>>>>> CODER_PATH    /opt/local/lib/ImageMagick-6.8.0/modules-Q16/coders
>>>>>>>>>> 
>>>>>>>>>> CONFIGURE     ./configure  '--prefix=/opt/local' '--enable-shared'
>>>>>>>>>> '--enable-static' '--disable-ltdl-install' '--disable-silent-rules'
>>>>>>>>>> '--with-frozenpaths' '--without-openexr' '--disable-hdri'
>>>>>>>>>> '--with-dps'
>>>>>>>>>> '--with-bzlib' '--with-fontconfig' '--with-gslib' '--with-jpeg'
>>>>>>>>>> '--with-lcms' '--with-png' '--with-tiff' '--with-webp'
>>>>>>>>>> '--with-zlib'
>>>>>>>>>> '--with-modules' '--with-xml' '--with-x' '--without-perl'
>>>>>>>>>> '--without-fpx'
>>>>>>>>>> '--without-jbig' '--without-jp2' '--without-wmf' '--without-gvc'
>>>>>>>>>> '--without-rsvg' '--without-lqr' '--without-pango'
>>>>>>>>>> '--with-gs-font-dir=/opt/local/share/fonts/urw-fonts'
>>>>>>>>>> '--with-quantum-depth=16' 'CC=/usr/bin/gcc-4.2' 'CFLAGS=-pipe -O2
>>>>>>>>>> -arch
>>>>>>>>>> x86_64' 'LDFLAGS=-L/opt/local/lib -arch x86_64'
>>>>>>>>>> 'CPPFLAGS=-I/opt/local/include' 'CXX=/usr/bin/g++-4.2'
>>>>>>>>>> 'CXXFLAGS=-pipe -O2
>>>>>>>>>> -arch x86_64'
>>>>>>>>>> 
>>>>>>>>>> CONFIGURE_PATH /opt/local/etc/ImageMagick/
>>>>>>>>>> 
>>>>>>>>>> COPYRIGHT     Copyright (C) 1999-2012 ImageMagick Studio LLC
>>>>>>>>>> 
>>>>>>>>>> CPPFLAGS      -I/opt/local/include/ImageMagick
>>>>>>>>>> 
>>>>>>>>>> CXX           /usr/bin/g++-4.2
>>>>>>>>>> 
>>>>>>>>>> CXXFLAGS      -pipe -O2 -arch x86_64 -D_THREAD_SAFE -pthread
>>>>>>>>>> 
>>>>>>>>>> DEFS          -DHAVE_CONFIG_H
>>>>>>>>>> 
>>>>>>>>>> DELEGATES     bzlib fftw fontconfig freetype gs jpeg jng lcms2 lzma
>>>>>>>>>> png tiff
>>>>>>>>>> x11 xml zlib
>>>>>>>>>> 
>>>>>>>>>> DISTCHECK_CONFIG_FLAGS 'CC=/usr/bin/gcc-4.2' 'CFLAGS=-pipe -O2
>>>>>>>>>> -arch x86_64'
>>>>>>>>>> 'CPPFLAGS=-I/opt/local/include' 'CXX=/usr/bin/g++-4.2'
>>>>>>>>>> 'LDFLAGS=-L/opt/local/lib -arch x86_64' --disable-deprecated
>>>>>>>>>> --with-quantum-depth=16 --with-umem=no --with-autotrace=no
>>>>>>>>>> --with-fpx=no
>>>>>>>>>> --with-fontpath=
>>>>>>>>>> --with-gs-font-dir=/opt/local/share/fonts/urw-fonts
>>>>>>>>>> --with-gvc=no --with-jp2=no --with-lqr=no --with-openexr=no
>>>>>>>>>> --with-pango=no
>>>>>>>>>> --with-rsvg=no --with-wmf=no --with-perl=no
>>>>>>>>>> 
>>>>>>>>>> DOCUMENTATION_PATH /opt/local/share/doc/ImageMagick-6.8.0
>>>>>>>>>> 
>>>>>>>>>> EXEC-PREFIX   /opt/local
>>>>>>>>>> 
>>>>>>>>>> EXECUTABLE_PATH /opt/local/bin
>>>>>>>>>> 
>>>>>>>>>> FEATURES      OpenCL OpenMP
>>>>>>>>>> 
>>>>>>>>>> FILTER_PATH   /opt/local/lib/ImageMagick-6.8.0/modules-Q16/filters
>>>>>>>>>> 
>>>>>>>>>> HOST          x86_64-apple-darwin10.8.0
>>>>>>>>>> 
>>>>>>>>>> INCLUDE_PATH  /opt/local/include/ImageMagick
>>>>>>>>>> 
>>>>>>>>>> LDFLAGS       -L/opt/local/lib -L/opt/local/lib -arch x86_64
>>>>>>>>>> -L/opt/local/lib -L/opt/local/lib
>>>>>>>>>> 
>>>>>>>>>> LIB_VERSION   0x680
>>>>>>>>>> 
>>>>>>>>>> LIB_VERSION_NUMBER 6,8,0,7
>>>>>>>>>> 
>>>>>>>>>> LIBRARY_PATH  /opt/local/lib/ImageMagick-6.8.0
>>>>>>>>>> 
>>>>>>>>>> LIBS          -lMagickCore -llcms2 -lfreetype -lfftw3
>>>>>>>>>> -L/opt/local/lib
>>>>>>>>>> -lfontconfig -lXext -lSM -lICE -lX11 -lXt -L/opt/local/lib -llzma
>>>>>>>>>> -lbz2 -lz
>>>>>>>>>> -lltdl -lm -lgomp -lclparser -Wl,-framework,OpenCL
>>>>>>>>>> -L/System/Library/Frameworks/OpenCL.framework/Versions/A/Libraries
>>>>>>>>>> -lm
>>>>>>>>>> -lpthread
>>>>>>>>>> 
>>>>>>>>>> NAME          ImageMagick
>>>>>>>>>> 
>>>>>>>>>> PCFLAGS       -fopenmp
>>>>>>>>>> 
>>>>>>>>>> PREFIX        /opt/local
>>>>>>>>>> 
>>>>>>>>>> QuantumDepth  16
>>>>>>>>>> 
>>>>>>>>>> RELEASE_DATE  2013-03-04
>>>>>>>>>> 
>>>>>>>>>> SHARE_PATH    /opt/local/share/ImageMagick-6.8.0
>>>>>>>>>> 
>>>>>>>>>> SVN_REVISION  10029
>>>>>>>>>> 
>>>>>>>>>> TARGET_CPU    x86_64
>>>>>>>>>> 
>>>>>>>>>> TARGET_OS     darwin10.8.0
>>>>>>>>>> 
>>>>>>>>>> TARGET_VENDOR apple
>>>>>>>>>> 
>>>>>>>>>> VERSION       6.8.0
>>>>>>>>>> 
>>>>>>>>>> WEBSITE       http://www.imagemagick.org
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Path: [built-in]
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Name          Value
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> -------------------------------------------------------------------------------
>>>>>>>>>> 
>>>>>>>>>> NAME          ImageMagick
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Any help would be appreciated. Thanks
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> -- output of sessionInfo():
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> R version 2.15.2 (2012-10-26)
>>>>>>>>>> 
>>>>>>>>>> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> locale:
>>>>>>>>>> 
>>>>>>>>>> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> attached base packages:
>>>>>>>>>> 
>>>>>>>>>> [1] tools     stats     graphics  grDevices utils     datasets
>>>>>>>>>> methods
>>>>>>>>>> base
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> other attached packages:
>>>>>>>>>> 
>>>>>>>>>> [1] latticeExtra_0.6-24   RColorBrewer_1.0-5    parody_1.16.0
>>>>>>>>>> bioDist_1.30.0
>>>>>>>>>> 
>>>>>>>>>> [5] KernSmooth_2.23-8     mvoutlier_1.9.9       sgeostat_1.0-25
>>>>>>>>>> robCompositions_1.6.3
>>>>>>>>>> 
>>>>>>>>>> [9] car_2.0-16            nnet_7.3-5            compositions_1.20-1
>>>>>>>>>> energy_1.4-0
>>>>>>>>>> 
>>>>>>>>>> [13] MASS_7.3-23           boot_1.3-7            tensorA_0.36
>>>>>>>>>> rgl_0.93.928
>>>>>>>>>> 
>>>>>>>>>> [17] flowViz_1.22.0        flowCore_1.24.2       rrcov_1.3-02
>>>>>>>>>> pcaPP_1.9-48
>>>>>>>>>> 
>>>>>>>>>> [21] mvtnorm_0.9-9994      robustbase_0.9-5      Biobase_2.18.0
>>>>>>>>>> lattice_0.20-13
>>>>>>>>>> 
>>>>>>>>>> [25] outliers_0.14         BiocGenerics_0.4.0
>>>>>>>>>> BiocInstaller_1.8.3
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> loaded via a namespace (and not attached):
>>>>>>>>>> 
>>>>>>>>>> [1] annotate_1.36.0      AnnotationDbi_1.20.5 DBI_0.2-5
>>>>>>>>>> feature_1.2.8
>>>>>>>>>> 
>>>>>>>>>> [5] flowQ_1.18.0         geneplotter_1.36.0   graph_1.36.2
>>>>>>>>>> grid_2.15.2
>>>>>>>>>> 
>>>>>>>>>> [9] hexbin_1.26.1        IDPmisc_1.1.17       IRanges_1.16.6
>>>>>>>>>> ks_1.8.11
>>>>>>>>>> 
>>>>>>>>>> [13] parallel_2.15.2      RSQLite_0.11.2       stats4_2.15.2
>>>>>>>>>> XML_3.95-0.1
>>>>>>>>>> 
>>>>>>>>>> [17] xtable_1.7-1
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> --
>>>>>>>>>> 
>>>>>>>>>> Sent via the guest posting facility at bioconductor.org.
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> _______________________________________________
>>>>>>>>>> 
>>>>>>>>>> Bioconductor mailing list
>>>>>>>>>> 
>>>>>>>>>> Bioconductor at r-project.org
>>>>>>>>>> 
>>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>>>>>>>>>> 
>>>>>>>>>> Search the archives:
>>>>>>>>>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Chandra Jack
>>>>>>>>>> 
>>>>>>>>>> Postdoctoral Research Assoc.
>>>>>>>>>> 
>>>>>>>>>> Dept. of Bioengineering
>>>>>>>>>> 
>>>>>>>>>> Rice University
>>>>>>>>>> 
>>>>>>>>>> chanj at rice.edu
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> Chandra Jack
>>>>>>>>>> Postdoctoral Research Assoc.
>>>>>>>>>> Dept. of Bioengineering
>>>>>>>>>> Rice University
>>>>>>>>>> chanj at rice.edu
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>> 
>>>>>>>> 
>>>>>>>> Chandra Jack
>>>>>>>> Postdoctoral Research Assoc.
>>>>>>>> Dept. of Bioengineering
>>>>>>>> Rice University
>>>>>>>> chanj at rice.edu
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>> 
>>>>>> 
>>>>>> Chandra Jack
>>>>>> Postdoctoral Research Assoc.
>>>>>> Dept. of Bioengineering
>>>>>> Rice University
>>>>>> chanj at rice.edu
>>>>>> 
>>>>>> 
>>>>>> 
>>>>> 
>>>> 
>>>> Chandra Jack
>>>> Postdoctoral Research Assoc.
>>>> Dept. of Bioengineering
>>>> Rice University
>>>> chanj at rice.edu
>>>> 
>>>> 
>>>> 
>>>> 
>>>>       [[alternative HTML version deleted]]
>>>> 
>>>> 
>>>> 
>>>> _______________________________________________
>>>> Bioconductor mailing list
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>>>> Search the archives:
>>>> http://news.gmane.org/gmane.science.biology.informatics.conductor
>>> 
>>> 
>> 
> 
> Chandra Jack
> Postdoctoral Research Assoc.
> Dept. of Bioengineering
> Rice University
> chanj at rice.edu
> 
> 
> 
> 
> 	[[alternative HTML version deleted]]
> 
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