[BioC] Calculate Outer Positions of GappedAlignmentPairs
Kasper Daniel Hansen
kasperdanielhansen at gmail.com
Thu Mar 21 02:57:15 CET 2013
Counting the space between the two reads is certainly used in some algorithms.
But we should have the capability to not do so.
Also, in both cases, we should be able to not double count if a base
is covered by both reads, in case they overlap.
On Wed, Mar 20, 2013 at 7:00 PM, Dario Strbenac
<d.strbenac at garvan.org.au> wrote:
> Thanks for the addition ! I was about to take up the challenge to create and submit an implementation.
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