[BioC] time course analyses Illumina RNA-seq data

Sandra Rehan sandra.rehan at gmail.com
Wed Mar 13 17:22:47 CET 2013

I am looking for software to analyze time course data for an Illumina
gene expression data set (four lanes of paired end reads). I have two
biological replicates for seven time points. All packages that I am
aware of (bats, time course, edge) are designed for microarray data
analysis. Does someone know of a software package designed for
Illumina time course data?

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