[BioC] BSgenome.Dmelanogaster.UCSC.dm3 package for R 3.0.0 beta?
James W. MacDonald
jmacdon at uw.edu
Wed Mar 27 20:00:05 CET 2013
On 3/27/2013 2:49 PM, ying chen wrote:
> Hi guys, Is there a BSgenome.Dmelanogaster.UCSC.dm3 package for R 3.0.0 beta? I tried one under BioC devel (http://www.bioconductor.org/packages/2.12/data/annotation/html/BSgenome.Dmelanogaster.UCSC.dm3.html), but had no success.> install.packages("BSgenome.Dmelanogaster.UCSC.dm3_1.3.19.tar.gz",repos="null",type="source")
> Warning: unable to access index for repository null/src/contrib
> Warning message:
> package ‘BSgenome.Dmelanogaster.UCSC.dm3_1.3.19.tar.gz’ is not available (for R version 3.0.0 beta)
You have found the correct package on the devel page, so I don't think
your question is whether or not one exists. Instead, it appears you are
wondering why it didn't install.
This is why we tell people (for example here:
http://www.bioconductor.org/install/) to do something like
Because a) you don't have to go searching around for the right package
and b) it just works.
So try installing the package the recommended way, and let us know if
you have problems.
> R version 3.0.0 beta (2013-03-24 r62395)
> Platform: x86_64-w64-mingw32/x64 (64-bit)locale:
>  LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
>  LC_MONETARY=English_United States.1252 LC_NUMERIC=C
>  LC_TIME=English_United States.1252 attached base packages:
>  stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached):
>  tools_3.0.0
> Thanks, Ying
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James W. MacDonald, M.S.
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099
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