[BioC] metabolite to gene - mapping

Marc Carlson mcarlson at fhcrc.org
Wed Mar 20 20:38:22 CET 2013

Hi Richard,

The Reactome.db package contains the entire reactome database.  It is 
not all exposed via select (on account of the fact that reactome is so 
enormous).  But by using the DBI and RSQLite packages, along with the 
included database connection, you should be able to get out anything 
from there that you wanted to extract.

And if you are willing to help me find the thing you wish to expose (the 
reactome database schema is quite complex), I can probably help you make 
it accessible via select.


On 03/14/2013 12:06 PM, Richard Friedman wrote:
> On Mar 14, 2013, at 3:04 PM, n omranian wrote:
>> Dear Rich,
>> Thanks a lot for your reply. I will check it and inform you about the result. but nothing exists in R?
>> Thanks.
>> Nooshin
> Not of which I am aware but maybe someone else on the list knows.
> Rich
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