[BioC] metabolite to gene - mapping
mcarlson at fhcrc.org
Wed Mar 20 20:43:26 CET 2013
One more thing:
It might also be worth your time to have a look at the KEGGREST package
(currently it's in devel).
On 03/20/2013 12:38 PM, Marc Carlson wrote:
> Hi Richard,
> The Reactome.db package contains the entire reactome database. It is
> not all exposed via select (on account of the fact that reactome is so
> enormous). But by using the DBI and RSQLite packages, along with the
> included database connection, you should be able to get out anything
> from there that you wanted to extract.
> And if you are willing to help me find the thing you wish to expose
> (the reactome database schema is quite complex), I can probably help
> you make it accessible via select.
> On 03/14/2013 12:06 PM, Richard Friedman wrote:
>> On Mar 14, 2013, at 3:04 PM, n omranian wrote:
>>> Dear Rich,
>>> Thanks a lot for your reply. I will check it and inform you about
>>> the result. but nothing exists in R?
>> Not of which I am aware but maybe someone else on the list knows.
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