[BioC] ChIPpeakAnno

Zhu, Lihua (Julie) Julie.Zhu at umassmed.edu
Sat Mar 16 16:18:45 CET 2013


You could use the following code to read in your peak file where
~/dataset/peaks1.bed contains the peaks in bed format.

peaks1= BED2RangedData(read.table("~/dataset/peaks1.bed", sep="\t"))

For detailed information on how to use ChIPpeakAnno, please type

Also, you might want to read the paper

Best regards,


On 3/16/13 10:34 AM, "Gaurav Pandey" <gaurav.pandey789 at gmail.com> wrote:

> Hello,
> I wanted to use the package CHIPpeakAnno, for my project work
> Can you please tell me how can I upload my own chip seq peak file and use
> annotate using CHIPpeakAnno.
> Thank you.
> Regards

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