[BioC] ChIPpeakAnno

[Zhu, Lihua (Julie)]

Gaurav,

You could use the following code to read in your peak file where
~/dataset/peaks1.bed contains the peaks in bed format.

Library(ChIPpeakAnno)
peaks1= BED2RangedData(read.table("~/dataset/peaks1.bed", sep="\t"))

For detailed information on how to use ChIPpeakAnno, please type
vignette("ChIPpeakAnno")

Also, you might want to read the paper
http://www.biomedcentral.com/1471-2105/11/237

Best regards,

Julie



On 3/16/13 10:34 AM, "Gaurav Pandey" <gaurav.pandey789 at gmail.com> wrote:

> Hello,
> I wanted to use the package CHIPpeakAnno, for my project work
> Can you please tell me how can I upload my own chip seq peak file and use
> annotate using CHIPpeakAnno.
> 
> Thank you.
> Regards