[BioC] Visualize metabolic network using table with reactions
Denis Kazakiewicz
d.kazakiewicz at gmail.com
Sun Mar 24 17:53:22 CET 2013
Hello,
I have metabolic reactions in data frame format.
Key variables are WholeCellModelID (reaction ID), Enzyme (enzyme ID),
Stoichiometry (reaction description in the format like [c]: COA + NAD +
PYR <==> ACCOA + CO2 + NADH).
So, it is easy to reshape this data if necessary.
The question is
What are basic steps and packages required to visualize these data as
metabolic network?
With best regards,
Denis Kazakiewicz
Bioinformatics Master Student
Politechnika Wroclawska
Poland
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