[BioC] Visualize metabolic network using table with reactions

Denis Kazakiewicz d.kazakiewicz at gmail.com
Sun Mar 24 17:53:22 CET 2013


I have metabolic reactions in data frame format.
Key variables are WholeCellModelID (reaction ID), Enzyme (enzyme ID), 
Stoichiometry (reaction description in the format like [c]: COA + NAD + 
PYR <==> ACCOA + CO2 + NADH).
So, it is easy to reshape this data if necessary.

The question is
What are basic steps and packages required to visualize these data as 
metabolic network?

With best regards,
Denis Kazakiewicz
Bioinformatics Master Student
Politechnika Wroclawska

More information about the Bioconductor mailing list