[BioC] mzR crashes R

[Laurent Gatto]

Dear Lin,

I forgot to update the release version of mzR to match Rcpp 0.10.3 and
commits to Bioc 2.11 are now disabled. A new version of mzR addressing
this will be available next week with the next Bioc release. In the
mean time, you could either stick with Rcpp 0.10.2 or install mzR
v1.5.9 [1], which is the current devel version (and will become the
next stable release in one week). I have not tested the latter, so
there might be other unexpected incompatibilities that show up.

Let us know if this works of need any further help.

Sorry for the inconvenience.

Best wishes,

Laurent


[1] http://bioconductor.org/packages/2.12/bioc/html/mzR.html


On 26 March 2013 15:39, Lin [guest] <guest at bioconductor.org> wrote:
>
> Hi all,
>
> Everytime I tried to run "library(mzR)" my R crashes. I tried to search through the mailing and found out that this seemed to be the problem of incompatibility between Rcpp and mzR. My Rcpp is 0.10.3 and the current mzR version is 1.4.6. How do I fix it?
>
> Alternatively, I think I should be able to install older version of Rcpp and mzR but I don't know which version I should install and how to install archieved version on windows.
>
> Thanks in advance for your help.
> Lin
>
>  -- output of sessionInfo():
>
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-pc-mingw32/x64 (64-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252
> [2] LC_CTYPE=English_United States.1252
> [3] LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] grDevices datasets  splines   graphics  stats     tcltk     utils
> [8] methods   base
>
> other attached packages:
> [1] Rcpp_0.10.3     svSocket_0.9-54 TinnR_1.0-5     R2HTML_2.2
> [5] Hmisc_3.10-1    survival_2.37-4
>
> loaded via a namespace (and not attached):
> [1] cluster_1.14.3  grid_2.15.1     lattice_0.20-15 svMisc_0.9-69
> [5] tools_2.15.1
>
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor