[BioC] Gene symbol update.
jhuang at hsph.harvard.edu
Sat Mar 16 04:00:50 CET 2013
Thank you very much for you help. You reply really make sense to me. I
have a list of old gene symbols that I simply want to modernize. You
code is what I want.
On Fri, Mar 15, 2013 at 8:32 PM, Marc Carlson <mcarlson at fhcrc.org> wrote:
> Hi Jinyan,
> It depends. It depends on what you are using for annotations, and also
> which version of bioconductor/R you are using. If you are using packages
> from the release last fall for example, then those things will have been
> updated back then. We are currently in the middle of updating these things
> right now for the upcoming spring release. And if you are using a web
> service like biomaRt, things may have already been updated very recently.
> So it depends on what you are using for annotations...
> Unless maybe you are actually asking about what to do with a list of old
> gene symbols that you simply want to modernize. In that case, I think you
> want do do something like this:
> select(org.Hs.eg.db, keys = c("CRSP6","KIAA0804"), cols="SYMBOL",
> Hope this helps,
> On 03/14/2013 10:09 PM, Jinyan Huang wrote:
>> Dear expert,
>> Is there some bioconductor package to update Gene symbol ?
>> CRSP6 update to MED17.
>> KIAA0804 update to VPS8
>> Best wishes,
>> Jinyan HUANG
>> Bioconductor mailing list
>> Bioconductor at r-project.org
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