[BioC] GO terms: Annotation for HumanMethylation450
fabrice.ciup at gmail.com
Fri Mar 29 19:24:02 CET 2013
Thank you very much for your reply.
I have a list of probe list.
Do you a example script for me to get the GO terms, instead of GO ID?
The Documentation is not very clear for this.
On Fri, Mar 29, 2013 at 12:29 PM, Tim Triche, Jr. <tim.triche at gmail.com> wrote:
> Oddly enough, the paper from UCSD with Illumina's folks on it (*) used the
> IlluminaHumanMethylation450k.db package (which I am currently rebuilding to
> have a startup message about toggleProbes()) to annotate both CpG islands
> and GO terms.
> On Fri, Mar 29, 2013 at 8:49 AM, Fabrice Tourre <fabrice.ciup at gmail.com>
>> Dear list,
>> In the annotation file of Infinium HumanMethylation450 BeadChip,
>> for each probe set, they do not have annotation for GO terms, pathways.
>> As they have done in the annotation file: HG-U133_Plus_2.na32.annot.csv.
>> Is there some bioconductor package to annotated the Infinium
>> HumanMethylation450 probes? Given a probe, feed back the GO terms and
>> Thank you very much in advance.
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