[BioC] GO terms: Annotation for HumanMethylation450

[Fabrice Tourre]

Tim,

Thank you very much for your reply.
I have a list of probe list.
Do you a example script for me to get the GO terms, instead of GO ID?

The Documentation is not very clear for this.
http://www.bioconductor.org/packages/2.11/data/annotation/html/IlluminaHumanMethylation450k.db.html

On Fri, Mar 29, 2013 at 12:29 PM, Tim Triche, Jr. <tim.triche at gmail.com> wrote:
> Oddly enough, the paper from UCSD with Illumina's folks on it (*) used the
> IlluminaHumanMethylation450k.db package (which I am currently rebuilding to
> have a startup message about toggleProbes()) to annotate both CpG islands
> and GO terms.
>
> (*)
> http://idekerlab.ucsd.edu/publications/Documents/Hannum_MolCell_2012.pdf
>
>
> On Fri, Mar 29, 2013 at 8:49 AM, Fabrice Tourre <fabrice.ciup at gmail.com>
> wrote:
>>
>> Dear list,
>>
>> In the annotation file of Infinium HumanMethylation450 BeadChip,
>>
>> http://support.illumina.com/documents/MyIllumina/b78d361a-def5-4adb-ab38-e8990625f053/HumanMethylation450_15017482_v.1.2.csv
>>
>> for each probe set, they do not have annotation for GO terms, pathways.
>>
>> As they have done in the annotation file: HG-U133_Plus_2.na32.annot.csv.
>>
>> Is there some bioconductor package to annotated the Infinium
>> HumanMethylation450 probes? Given a probe, feed back the GO terms and
>> pathways.
>>
>> Thank you very much in advance.
>>
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>
>
>
>
> --
> A model is a lie that helps you see the truth.
>
> Howard Skipper