February 2010 Archives by author

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Starting: Mon Feb 1 00:27:46 CET 2010
Ending: Sun Feb 28 19:16:40 CET 2010
Messages: 438

• [BioC] Getting probes id for particular probeset id   marek piatek (BI)
• [BioC] Getting probes id for particular probeset id   marek piatek (BI)
• [BioC] Getting probes id for particular probeset id   marek piatek (BI)
• [BioC] weird total number of probset ids in MoGene 1.0 ST Array   marek piatek (BI)
• [BioC] GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?   michael watson (IAH-C)
• [BioC] link to KEGG   michael watson (IAH-C)
• [BioC] Is there a way of counting a miRNA binding sites in a target gene   michael watson (IAH-C)
• [BioC] GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?   michael watson (IAH-C)
• [BioC] Comparing gene set enrichment lists / GO terms   michael watson (IAH-C)
• [BioC] GO terms   michael watson (IAH-C)
• [BioC] DNA micro-array normalization   michael watson (IAH-C)
• [BioC] DNA micro-array normalization   michael watson (IAH-C)
• [BioC] BLAST E-value   michael watson (IAH-C)
• [BioC] BLAST E-value   michael watson (IAH-C)
• [BioC] Query   michael watson (IAH-C)
• [BioC] Query   michael watson (IAH-C)
• [BioC] Query   michael watson (IAH-C)
• [BioC] pair information of microRNA and Targets prediction   michael watson (IAH-C)
• [BioC] R: info for cuda on R   Manca Marco (PATH)
• [BioC] unexpected result of rep(Rle(), times=<vector or Rle>)   Patrick Aboyoun
• [BioC] unexpected behaviour of pairwiseAlignment() in Biostrings   Patrick Aboyoun
• [BioC] IRanges::rbind with names stopped working   Patrick Aboyoun
• [BioC] JOB: Open position within the Rfam group at the Sanger Institute (fwd)   Cei Abreu-Goodger
• [BioC] OT: biostar questions and answers   Istvan Albert
• [BioC] FW: duplicates, technical and biological replicates + dividing a microarray into two parts   Naomi Altman
• [BioC] HTqPCR and limma and factorial design with no replicates   Naomi Altman
• [BioC] HTqPCR and limma and factorial design with no replicates   Naomi Altman
• [BioC] reproducibility between reads?   Naomi Altman
• [BioC] Positive correlation between dye-swap technical replicates   Naomi Altman
• [BioC] contrast.fit and different p-values for same comparison   Naomi Altman
• [BioC] variation between cells compared to samples   Simon Anders
• [BioC] variation between cells compared to samples   Simon Anders
• [BioC] ANOVA vs T-TEST vs eBayes   Simon Anders
• [BioC] Mapping using absolute coordinates   Droit Arnaud
• [BioC] is.atomic error with betr function   Martin Aryee
• [BioC] Error in reading CEL files   Niccolò Bassani
• [BioC] Discrepancy on results from gcrma function and justGCRMA   Henrik Bengtsson
• [BioC] Affxparser: warning creating cel file from AffyBatch   Henrik Bengtsson
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Henrik Bengtsson
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Henrik Bengtsson
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Henrik Bengtsson
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Henrik Bengtsson
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Henrik Bengtsson
• [BioC] RangedData negative row subscript   Charles C. Berry
• [BioC] Bioconductor Digest, Vol 84, Issue 19   Dick Beyer
• [BioC] Bioconductor Digest, Vol 84, Issue 19   Dick Beyer
• [BioC] IntegrOmics   Dick Beyer
• [BioC] is.atomic error with betr function   Anthony Bosco
• [BioC] is.atomic error with betr function   Anthony Bosco
• [BioC] Parameter names must by syntactically valid names in R   Karl Brand
• [BioC] Parameter names must by syntactically valid names in R   Karl Brand
• [BioC] limma warning: Coefficients not estimable   Karl Brand
• [BioC] limma warning: Coefficients not estimable   Karl Brand
• [BioC] limma warning: Coefficients not estimable   Karl Brand
• [BioC] biocLite() installation error   Eric Bremer
• [BioC] cvArray error from AgiMicroRna package   Daniel Brewer
• [BioC] Normalisation of Agilent microRNA arrays using inbuilt controls?   Daniel Brewer
• [BioC] rma.background.correct produces lots of NaNs for one array   Daniel Brewer
• [BioC] cvArray error from AgiMicroRna package   Daniel Brewer
• [BioC] BLAST E-value   Alla Bulashevska
• [BioC] function handle in R   Vincent Carey
• [BioC] Installing problems of Flow Cytometry on Ubuntu Karmic   Vincent Carey
• [BioC] Installing problems of Flow Cytometry on Ubuntu Karmic   Vincent Carey
• [BioC] graph object question   Vincent Carey
• [BioC] GOstats testing using EntrezGene IDs not in chip-specific annotation package?   Marc Carlson
• [BioC] AnnotationDbi   Marc Carlson
• [BioC] link to KEGG   Marc Carlson
• [BioC] GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?   Marc Carlson
• [BioC] using the hyperGTest function for E. coli genes   Marc Carlson
• [BioC] GO terms   Marc Carlson
• [BioC] KEGGSOAP, hgu95av2.db: limited functionality   Marc Carlson
• [BioC] oligo package cannot read files when gdata is loaded   Benilton Carvalho
• [BioC] oligo package cannot read files when gdata is loaded   Benilton Carvalho
• [BioC] oligo package cannot read files when gdata is loaded   Benilton Carvalho
• [BioC] pdInfoBuilder for Niblegen 12x135k array, argument "posFile" is missing, with no default   Benilton Carvalho
• [BioC] pdInfoBuilder for Niblegen 12x135k array, argument "posFile" is missing, with no default   Benilton Carvalho
• [BioC] crlmm with Illumina arrays   Benilton Carvalho
• [BioC] PdInfoBuilder for nimblegen array   Benilton Carvalho
• [BioC] PdInfoBuilder for nimblegen array   Benilton Carvalho
• [BioC] PdInfoBuilder for nimblegen array   Benilton Carvalho
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Benilton Carvalho
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Benilton Carvalho
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Benilton Carvalho
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Benilton Carvalho
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Benilton Carvalho
• [BioC] stranded findOverlaps   Robert Castelo
• [BioC] IRanges::rbind with names stopped working   Robert Castelo
• [BioC] IRanges::rbind with names stopped working   Robert Castelo
• [BioC] help for mRNA decay rate   Robert Castelo
• [BioC] help for mRNA decay rate   Robert Castelo
• [BioC] plateviewer   Arunava Chakravartty
• [BioC] plateviewer   Arunava Chakravartty
• [BioC] cytoband.Rdata for chicken genome   Chuming Chen
• [BioC] Search queries with biomaRt does not align with online queries via ensembl   Tony Chiang
• [BioC] using the hyperGTest function for E. coli genes   Coghlan, Avril
• [BioC] Bioinformatics faculty positions at M.D. Anderson   Kevin Coombes
• [BioC] limma and Rank Products: comparison of the number of results   Aedin Culhane
• [BioC] Seeking assistance on ROC   Sean Davis
• [BioC] Agilent annotation source   Sean Davis
• [BioC] link to KEGG   Sean Davis
• [BioC] concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]   Sean Davis
• [BioC] CNVtools installation error - not available   Sean Davis
• [BioC] snapCGH package not loaded   Sean Davis
• [BioC] Is there a way of counting a miRNA binding sites in a target gene   Sean Davis
• [BioC] getGEO problem   Sean Davis
• [BioC] Converting data into MAlist to use in LIMMA   Sean Davis
• [BioC] within array normalization for one color agilent array.??   Sean Davis
• [BioC] taking the median across similar data   Sean Davis
• [BioC] Distinguish Synonymous vs. Non-synonymous SNPs   Michael Dondrup
• [BioC] Obtaining exon structure of a gene via Bioconductor   Michael Dondrup
• [BioC] Obtaining exon structure of a gene via Bioconductor   Michael Dondrup
• [BioC] Issues with RWebServices on MacOSX, ant rservices-test fails (1)   Michael Dondrup
• [BioC] Issues with RWebServices on MacOSX, ant rservices-test fails (1)   Michael Dondrup
• [BioC] Reading xls affymetrix file?   Noah Dowell
• [BioC] Discrepancy on results from gcrma function and justGCRMA   Jenny Drnevich
• [BioC] Discrepancy on results from gcrma function and justGCRMA   Jenny Drnevich
• [BioC] FW: Problem in masking individual probes to calculate expression values   Jenny Drnevich
• [BioC] Rcode for removing probes   Jenny Drnevich
• [BioC] plateviewer   Heidi Dvinge
• [BioC] HTqPCR: Calculate CV between replicates with in a plate   Heidi Dvinge
• [BioC] GO terms   Heidi Dvinge
• [BioC] GO terms   Heidi Dvinge
• [BioC] HTqPCR - how to read data file with multiple samples   Heidi Dvinge
• [BioC] HTqPCR: Calculate CV between replicates with in a plate   Heidi Dvinge
• [BioC] qPCR plates containing multiple samples in HTqPCR   Heidi Dvinge
• [BioC] HTqPCR: Calculate CV between replicates with in a plate   Heidi Dvinge
• [BioC] Draft paper submission deadline is extended: BCBGC-10, Orlando, USA   John Edward
• [BioC] Call for papers: BCBGC-10, Orlando, USA, July 2010   John Edward
• [BioC] Bioinformatics position, Austria   David Enot
• [BioC] HTqPCR - how to read data file with multiple samples   Marco Fabbri
• [BioC] filetr to Agilent 4 x 44 array   Marco Fabbri
• [BioC] snapCGH package not loaded   João Fadista
• [BioC] Parameter names must by syntactically valid names in R   Seth Falcon
• [BioC] Installing problems of Flow Cytometry on Ubuntu Karmic   Seth Falcon
• [BioC] graph object question   Seth Falcon
• [BioC] updateObject fails   Seth Falcon
• [BioC] link to KEGG   Gilbert Feng
• [BioC] gene vs disease   Gilbert Feng
• [BioC] pdInfoBuilder for Niblegen 12x135k array, argument "posFile" is missing, with no default   Chris Fenton
• [BioC] Improvements on GCRMA function   Javier Pérez Florido
• [BioC] function handle in R   Javier Pérez Florido
• [BioC] function handle in R   Javier Pérez Florido
• [BioC] HTqPCR and limma and factorial design with no replicates   Andreia Fonseca
• [BioC] HTqPCR and limma and factorial design with no replicates   Andreia Fonseca
• [BioC] problems with bioconductor installation   Andreia Fonseca
• [BioC] Improvements on GCRMA function   Richard Friedman
• [BioC] BLAST E-value   Richard Friedman
• [BioC] graph object question   Iain Gallagher
• [BioC] graph object question   Iain Gallagher
• [BioC] pair information of microRNA and Targets prediction   Laurent Gautier
• [BioC] Strange output in GenABEL convert.snp.ped()   Paul Geeleher
• [BioC] Strange output in GenABEL convert.snp.ped()   Paul Geeleher
• [BioC] Using combineReplicates in computeRunningMedians() function in Ringo   Paul Geeleher
• [BioC] KEGGSOAP, hgu95av2.db: limited functionality   Ludwig Geistlinger
• [BioC] problem loading xcms in R after normal installation   Gertsman, Ilya
• [BioC] info for mutation database   Alberto Goldoni
• [BioC] help for mRNA decay rate   Alberto Goldoni
• [BioC] gene vs disease   Alberto Goldoni
• [BioC] help for mRNA decay rate   Alberto Goldoni
• [BioC] help with matrix   Alberto Goldoni
• [BioC] info for cuda on R   Alberto Goldoni
• [BioC] Problem reading files on FlowCore   Nishant Gopalakrishnan
• [BioC] crlmm with Illumina arrays   Lavinia Gordon
• [BioC] re-ordered gene list and column names on heatplot map   xiangxue Guo
• [BioC] re-ordered gene list in heatplot of made4   xiangxue Guo
• [BioC] DNA micro-array normalization   Thomas Hampton
• [BioC] limma and Rank Products: comparison of the number of results   Thomas Hampton
• [BioC] limma and Rank Products: comparison of the number of results   Thomas Hampton
• [BioC] bug in IRanges::disjoin and strange behavior of c   Kasper Daniel Hansen
• [BioC] what is good book to learn Next Gen. Seq. analysis?   Kasper Daniel Hansen
• [BioC] help for mRNA decay rate   Kasper Daniel Hansen
• [BioC] seqinr write.fasta problem with max characters per line   Kasper Daniel Hansen
• [BioC] taking the median across similar data   Harikrishnadhar
• [BioC] question about lmFit model: double filtering not such a good idea?   Christos Hatzis
• [BioC] CNVtools installation error - not available   Bryan Hepworth
• [BioC] BLAST E-value   John Herbert
• [BioC] How does the rank product calculate the fold change   Georg Hildebrand
• [BioC] How does the rank product calculate the fold change   Hildebrand, Georg
• [BioC] How does the rank product calculate the fold change   Hildebrand, Georg
• [BioC] Agilent arrays: spot quality weights for limma   Hooiveld, Guido
• [BioC] Agilent arrays: spot quality weights for limma   Hooiveld, Guido
• [BioC] Affxparser: warning creating cel file from AffyBatch   Hooiveld, Guido
• [BioC] IntegrOmics   Hooiveld, Guido
• [BioC] Affxparser: warning creating cel file from AffyBatch   Hooiveld, Guido
• [BioC] 'ArrayExpress' creates invalid AffyBatch objects   Wolfgang Huber
• [BioC] R Course 28-29 March in Heidelberg (EMBL)   Wolfgang Huber
• [BioC] Agilent arrays: spot quality weights for limma   Wolfgang Huber
• [BioC] plateviewer   Wolfgang Huber
• [BioC] GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?   Wolfgang Huber
• [BioC] cellHTS2 html report   Wolfgang Huber
• [BioC] problems with bioconductor installation   Wolfgang Huber
• [BioC] GO terms   Wolfgang Huber
• [BioC] GO terms   Wolfgang Huber
• [BioC] Error in reading CEL files   Wolfgang Huber
• [BioC] problems with bioconductor installation   Wolfgang Huber
• [BioC] DNA micro-array normalization   Wolfgang Huber
• [BioC] limma and Rank Products: comparison of the number of results   Wolfgang Huber
• [BioC] variation between cells compared to samples   Wolfgang Huber
• [BioC] Normalization question   Wolfgang Huber
• [BioC] contrast.fit and different p-values for same comparison   Lakshmanan Iyer
• [BioC] problems with bioconductor installation   Lakshmanan Iyer
• [BioC] How does the rank product calculate the fold change   Lakshmanan Iyer
• [BioC] what is good book to learn Next Gen. Seq. analysis?   Saurin D. Jani
• [BioC] gene vs disease   Saurin D. Jani
• [BioC] GO terms   Adrian Johnson
• [BioC] GO terms   Adrian Johnson
• [BioC] seqinr write.fasta problem with max characters per line   Jonathan
• [BioC] Loop design - biological, technical replication and contrasts   Maciej Jończyk
• [BioC] warning message with Statmod   Priyanka Kachroo
• [BioC] multi genome comparison   Cheng-Yuan Kao
• [BioC] multi genome comparison   Cheng-Yuan Kao
• [BioC] multi genome comparison   Cheng-Yuan Kao
• [BioC] Query   Yogesh Kumar
• [BioC] missing example data from cghMCR package   Burak Kutlu
• [BioC] missing example data from cghMCR package   Burak Kutlu
• [BioC] beginner limma q   Marissa LaMadrid
• [BioC] Rgraphviz installation: DLL problem?   Gustavo Lacerda
• [BioC] shared library 'Rgraphviz' not found   Gustavo Lacerda
• [BioC] timecourse package - Missing data   Marcelo Laia
• [BioC] timecourse package - Missing data   Marcelo Laia
• [BioC] Empirical Pvalue   Mohamed Lajnef
• [BioC] Empirical pvalue   Mohamed Lajnef
• [BioC] Fisher's method of combining p-values   Laura
• [BioC] IRanges::rbind with names stopped working   Michael Lawrence
• [BioC] RangedData negative row subscript   Michael Lawrence
• [BioC] rsbml: which libsbml version? (fwd)   Michael Lawrence
• [BioC] rtracklayer and multiple ranges   Michael Lawrence
• [BioC] handling missing data with ucscTableQuery in rtracklayer package   Michael Lawrence
• [BioC] multi genome comparison   Michael Lawrence
• [BioC] multi genome comparison   Michael Lawrence
• [BioC] Q-value question   Guido Leoni
• [BioC] cellHTS2 html report   Li Li
• [BioC] Agi4x44PreProcess - Filtering Probe Function   Yong Li
• [BioC] Removing genes from linear model fit advice sought   Yong Li
• [BioC] affy2agi   Yong Li
• [BioC] Normalization question   Yong Li
• [BioC] Seeking assistance on ROC   Steve Lianoglou
• [BioC] please remove my email from the mailing list.   Steve Lianoglou
• [BioC] Obtaining exon structure of a gene via Bioconductor   Steve Lianoglou
• [BioC] About the problem for loading tcltk   Steve Lianoglou
• [BioC] variation between cells compared to samples   Steve Lianoglou
• [BioC] Positive correlation between dye-swap technical replicates   Philip Lijnzaad
• [BioC] cvArray error from AgiMicroRna package   Pedro Lopez-Romero
• [BioC] Normalisation of Agilent microRNA arrays using inbuilt controls?   Pedro Lopez-Romero
• [BioC] Questions on the package "RmiR"   Jason Lu
• [BioC] affyBatch: probes from intensity table not listed in the output of indexProbes()   James W. MacDonald
• [BioC] Regardin GCRMA normalization   James W. MacDonald
• [BioC] regarding GCRMA normalization   James W. MacDonald
• [BioC] ReadAffy() function   James W. MacDonald
• [BioC] Obtaining exon structure of a gene via Bioconductor   James W. MacDonald
• [BioC] question regarding genefilter package   James W. MacDonald
• [BioC] question regarding genefilter package   James W. MacDonald
• [BioC] plateviewer   James W. MacDonald
• [BioC] Q-value question   James W. MacDonald
• [BioC] Discrepancy on results from gcrma function and justGCRMA   James W. MacDonald
• [BioC] Discrepancy on results from gcrma function and justGCRMA   James W. MacDonald
• [BioC] Agilent annotation source   James W. MacDonald
• [BioC] Fwd: modifyWeights Problem   James W. MacDonald
• [BioC] Fwd: modifyWeights Problem   James W. MacDonald
• [BioC] objects masked from packages   James W. MacDonald
• [BioC] Hgu 133A HT arrays   James W. MacDonald
• [BioC] annaffy can't saveHTML   James W. MacDonald
• [BioC] Getting probes id for particular probeset id   James W. MacDonald
• [BioC] limma warning: Coefficients not estimable   James W. MacDonald
• [BioC] annaffy can't saveHTML   James W. MacDonald
• [BioC] GO terms   James W. MacDonald
• [BioC] annaffy can't saveHTML   James W. MacDonald
• [BioC] DNA micro-array normalization   James W. MacDonald
• [BioC] help with matrix   James W. MacDonald
• [BioC] DNA micro-array normalization   James W. MacDonald
• [BioC] rsbml: which libsbml version?   Rainer Machne
• [BioC] rsbml: which libsbml version? (fwd)   Rainer Machne
• [BioC] question about lmFit model: double filtering not such a good idea?   Koen Marien
• [BioC] snapCGH package not loaded   John Marioni
• [BioC] Getting probes id for particular probeset id   Mark
• [BioC] Lumi, HT-12 chip, and number of bead replicates   Christina Markunas
• [BioC] FW: duplicates, technical and biological replicates + dividing a microarray into two parts   Claus Mayer
• [BioC] FW: Problem in masking individual probes to calculate expression values   Memon, Farhat N
• [BioC] Job posting: Bioinformatician (2), The Netherlands   Menezes, R.
• [BioC] Installing problems of Flow Cytometry on Ubuntu Karmic   Philipp Meng
• [BioC] Installing problems of Flow Cytometry on Ubuntu Karmic   Philipp Meng
• [BioC] what does mean of Densities on y axis in the graph generated by plotDensities   Saroj K Mohapatra
• [BioC] please remove my email from the mailing list.   Martin Morgan
• [BioC] Rgraphviz installation: DLL problem?   Martin Morgan
• [BioC] oligo package cannot read files when gdata is loaded   Martin Morgan
• [BioC] Updated new package submission process   Martin Morgan
• [BioC] GSEA using Broad genesets   Martin Morgan
• [BioC] Installing problems of Flow Cytometry on Ubuntu Karmic   Martin Morgan
• [BioC] Strange output in GenABEL convert.snp.ped()   Martin Morgan
• [BioC] GSEA using Broad genesets   Martin Morgan
• [BioC] GSEA using Broad genesets   Martin Morgan
• [BioC] problems with bioconductor installation   Martin Morgan
• [BioC] shared library 'Rgraphviz' not found   Martin Morgan
• [BioC] Bioconductor Digest, Vol 84, Issue 19   Martin Morgan
• [BioC] updateObject fails   Martin Morgan
• [BioC] Issues with RWebServices on MacOSX, ant rservices-test fails (1)   Martin Morgan
• [BioC] Query   Martin Morgan
• [BioC] missing example data from cghMCR package   Martin Morgan
• [BioC] DNAcopy installation error   Martin Morgan
• [BioC] Converting data into MAlist to use in LIMMA   Aubin-Horth Nadia
• [BioC] Converting data into MAlist to use in LIMMA   Aubin-Horth Nadia
• [BioC] Read Agilent 244k chip and QC   Marc Noguera
• [BioC] limma and Rank Products: comparison of the number of results   Juan Carlos Oliveros
• [BioC] limma and Rank Products: comparison of the number of results   Juan Carlos Oliveros
• [BioC] limma and Rank Products: comparison of the number of results   Juan Carlos Oliveros
• [BioC] Read Agilent 244k chip and QC   Juan Carlos Oliveros
• [BioC] How does the rank product calculate the fold change   Juan Carlos Oliveros
• [BioC] Reading xls affymetrix file?   Moshe Olshansky
• [BioC] seqinr write.fasta problem with max characters per line   Moshe Olshansky
• [BioC] ReadAffy() function   Ron Ophir
• [BioC] ReadAffy() function   Ron Ophir
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Mikhail Pachkov
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Mikhail Pachkov
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   Mikhail Pachkov
• [BioC] bug in IRanges::disjoin and strange behavior of c   Hervé Pagès
• [BioC] Empirical Pvalue   Hervé Pagès
• [BioC] problems with bioconductor installation   Hervé Pagès
• [BioC] problems with bioconductor installation   Hervé Pagès
• [BioC] plateviewer   Gregoire Pau
• [BioC] filetr to Agilent 4 x 44 array   Francois Pepin
• [BioC] link to KEGG   Marcos Pinho
• [BioC] link to KEGG   Marcos Pinho
• [BioC] limma: writing down the matrix in an almost (?) factorial design experiment   Massimo Pinto
• [BioC] limma: writing down the matrix in an almost (?) factorial design experiment   Massimo Pinto
• [BioC] Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)   Suyog Pol
• [BioC] Fisher's method of combining p-values   Adaikalavan Ramasamy
• [BioC] what is good book to learn Next Gen. Seq. analysis?   James F. Reid
• [BioC] Is there anyway to map a set of EST id's to genBank accessions?   James F. Reid
• [BioC] DNAcopy   Rico.Daniel
• [BioC] extendReads in package chipseq - reads are extended below zero   Nora Rieber
• [BioC] link to KEGG   Peter Robinson
• [BioC] gene vs disease   Robinson, Peter
• [BioC] handling missing data with ucscTableQuery in rtracklayer package   Ana Rodrigues
• [BioC] PdInfoBuilder for nimblegen array   Alex Rodriguez
• [BioC] PdInfoBuilder for nimblegen array   Alex Rodriguez
• [BioC] PdInfoBuilder for nimblegen array   Alex Rodriguez
• [BioC] PdInfoBuilder for nimblegen array   Alex Rodriguez
• [BioC] rtracklayer and multiple ranges   Christian Ruckert
• [BioC] 'Cheminformatics in R' workshop at the EBI: 17-18 May 2010   Gabriella Rustici
• [BioC] Problem with MAS5 calls on MoEx array   Peter Saffrey
• [BioC] Problem with MAS5 calls on MoEx array   Peter Saffrey
• [BioC] Problem with MAS5 calls on MoEx array   Peter Saffrey
• [BioC] Problem reading files on FlowCore   Sancho, Jose
• [BioC] Problem reading files on FlowCore   Sancho, Jose
• [BioC] Problem reading files on FlowCore   Sancho, Jose
• [BioC] concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]   Paul Shannon
• [BioC] what is good book to learn Next Gen. Seq. analysis?   Pete Shepard
• [BioC] problems with bioconductor installation   Pete Shepard
• [BioC] problems with bioconductor installation   Pete Shepard
• [BioC] variation between cells compared to samples   Pete Shepard
• [BioC] problems with bioconductor installation   Pete Shepard
• [BioC] variation between cells compared to samples   Pete Shepard
• [BioC] Normalisation of Agilent microRNA arrays using inbuilt controls?   Wei Shi
• [BioC] filetr to Agilent 4 x 44 array   Wei Shi
• [BioC] modifyWeights Problem   Gordon K Smyth
• [BioC] modifyWeights Problem   Gordon K Smyth
• [BioC] limma warning: Coefficients not estimable   Gordon K Smyth
• [BioC] limma warning: Coefficients not estimable   Gordon K Smyth
• [BioC] beginner limma q   Gordon K Smyth
• [BioC] Installing problems of Flow Cytometry on Ubuntu   Josef Spidlen
• [BioC] affyBatch: probes from intensity table not listed in the output of indexProbes()   Mikhail Spivakov
• [BioC] Q-value question   Sunny Srivastava
• [BioC] FW: duplicates, technical and biological replicates + dividing a microarray into two parts   Staninska, Ana, Dr.
• [BioC] FW: duplicates, technical and biological replicates + dividing a microarray into two parts   Staninska, Ana, Dr.
• [BioC] FW: duplicates, technical and biological replicates + dividing a microarray into two parts   Staninska, Ana, Dr.
• [BioC] updateObject fails   Mayte Suarez-Farinas
• [BioC] timecourse package - Missing data   Yu Chuan Tai
• [BioC] Statistical Bioinformatics Position in Oxford   Steve Taylor
• [BioC] objects masked from packages   Joern Toedling
• [BioC] GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?   Joern Toedling
• [BioC] Using combineReplicates in computeRunningMedians() function in Ringo   Joern Toedling
• [BioC] ChIPpeakAnno   Joern Toedling
• [BioC] Obtaining exon structure of a gene via Bioconductor   Ruppert Valentino
• [BioC] Obtaining exon structure of a gene via Bioconductor   Ruppert Valentino
• [BioC] Is there anyway to map a set of EST id's to genBank accessions?   Peter Waltman
• [BioC] About the problem for loading tcltk   Likun Wang
• [BioC] Problem reading files on FlowCore   Chao-Jen Wong
• [BioC] Problem reading files on FlowCore   Chao-Jen Wong
• [BioC] Problem reading files on FlowCore   Chao-Jen Wong
• [BioC] Improvements on GCRMA function   Zhijin Wu
• [BioC] objects masked from packages   Assa Yeroslaviz
• [BioC] annaffy can't saveHTML   Assa Yeroslaviz
• [BioC] affy2agi   Assa Yeroslaviz
• [BioC] annaffy can't saveHTML   Assa Yeroslaviz
• [BioC] annaffy can't saveHTML   Assa Yeroslaviz
• [BioC] ChIPpeakAnno   Julie Zhu
• [BioC] ChIPpeakAnno   Julie Zhu
• [BioC] ChIPpeakAnno   Julie Zhu
• [BioC] ChIPpeakAnno   Julie Zhu
• [BioC] ChIPpeakAnno   Julie Zhu
• [BioC] ChipPeakAnno   Julie Zhu
• [BioC] Agilent annotation source   axel.klenk at actelion.com
• [BioC] GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?   axel.klenk at actelion.com
• [BioC] annaffy can't saveHTML   axel.klenk at actelion.com
• [BioC] Is there a way of counting a miRNA binding sites in a target gene   mauede at alice.it
• [BioC] Reading xls affymetrix file?   avehna
• [BioC] DNA micro-array normalization   avehna
• [BioC] DNA micro-array normalization   avehna
• [BioC] ANOVA vs T-TEST vs eBayes   avehna
• [BioC] ANOVA vs T-TEST vs eBayes   avehna
• [BioC] limma and p-value cutoff   avehna
• [BioC] Hgu 133A HT arrays   somnath bandyopadhyay
• [BioC] ChIPpeakAnno   somnath bandyopadhyay
• [BioC] ChIPpeakAnno   somnath bandyopadhyay
• [BioC] RMA/QuantileNormalization results difference between oligo and aroma.affymetrix for Hugene   bmb at bmbolstad.com
• [BioC] Question about simpleaffy   claire
• [BioC] Problem with MAS5 calls on MoEx array   cstrato
• [BioC] Problem with MAS5 calls on MoEx array   cstrato
• [BioC] Problem with MAS5 calls on MoEx array   cstrato
• [BioC] Problem with MAS5 calls on MoEx array   cstrato
• [BioC] GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?   J.delasHeras at ed.ac.uk
• [BioC] GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?   J.delasHeras at ed.ac.uk
• [BioC] GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?   J.delasHeras at ed.ac.uk
• [BioC] GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?   J.delasHeras at ed.ac.uk
• [BioC] Converting data into MAlist to use in LIMMA   J.delasHeras at ed.ac.uk
• [BioC] [BIOC COURSE] CSAMA10 - 14-18/June/2010 - Brixen (Italy)   stefano iacus
• [BioC] pair information of microRNA and Targets prediction   jrwang at itri.org.tw
• [BioC] please remove my email from the mailing list.   nazanin kermani
• [BioC] what does mean of Densities on y axis in the graph generated by plotDensities   neeraj rana
• [BioC] within array normalization for one color agilent array.??   neeraj rana
• [BioC] DNAcopy installation error   seth redmond
• [BioC] landscape genetics analysis   milton ruser
• [BioC] Fwd: modifyWeights Problem   stephen sefick
• [BioC] modifyWeights   stephen sefick
• [BioC] Fwd: modifyWeights Problem   stephen sefick
• [BioC] modifyWeights Problem   stephen sefick
• [BioC] Converting data into MAlist to use in LIMMA   stephen sefick
• [BioC] Removing genes from linear model fit advice sought   stephen sefick
• [BioC] Removing genes from linear model fit advice sought   stephen sefick
• [BioC] linear predictor of weibull model   carol white
• [BioC] HTqPCR: Calculate CV between replicates with in a plate   jeremy wilson
• [BioC] HTqPCR: Calculate CV between replicates with in a plate   jeremy wilson
• [BioC] question regarding genefilter package   zrl
• [BioC] question regarding genefilter package   zrl
• [BioC] GSEA using Broad genesets   zrl
• [BioC] GSEA using Broad genesets   zrl
• [BioC] GSEA using Broad genesets   zrl
• [BioC] GSEA using Broad genesets   zrl

Last message date: Sun Feb 28 19:16:40 CET 2010
Archived on: Sun Feb 28 19:17:01 CET 2010

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