[BioC] pdInfoBuilder for Niblegen 12x135k array, argument "posFile" is missing, with no default

Chris Fenton chrisf at fagmed.uit.no
Fri Feb 5 14:52:23 CET 2010


Pretty much copied the code from
http://linusben.net/wiki/index.php/Oligo.bioconductor.


Something ala, 

"""
> library(pdInfoBuilder)
> filename_ndf <- list.files('.',pattern='.ndf',full.names=T)
> filename_xys <- list.files('.',pattern=".xys",full.names=T)[1]
> seed <- new("NgsExpressionPDInfoPkgSeed", ndfFile=filename_ndf, xysFile=filename_xys,
            author="Taejoon Kwon",email="email address",
            biocViews="AnnotationData", genomebuild="Unknown",
            url="http://www.marcottelab.org")
> makePdInfoPackage(seed, destDir = ".")
"""

I get the folling error in the seed <- new(...) line  

"""
argument "posFile" is missing, with no default 
"""


Can't seem to find any documentation on this parameter. 
Anyone run into this ? 

Chris 



sessionInfo()

R version 2.7.2 (2008-08-25) 
i686-pc-linux-gnu 

locale:
C

attached base packages:
[1] splines   tools     stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
[1] pdInfoBuilder_1.4.0  oligo_1.4.0          oligoClasses_1.2.0  
[4] AnnotationDbi_1.2.2  preprocessCore_1.2.1 affxparser_1.12.2   
[7] RSQLite_0.7-1        DBI_0.2-4            Biobase_2.0.1



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