[BioC] pdInfoBuilder for Niblegen 12x135k array, argument "posFile" is missing, with no default
Chris Fenton
chrisf at fagmed.uit.no
Fri Feb 5 14:52:23 CET 2010
Pretty much copied the code from
http://linusben.net/wiki/index.php/Oligo.bioconductor.
Something ala,
"""
> library(pdInfoBuilder)
> filename_ndf <- list.files('.',pattern='.ndf',full.names=T)
> filename_xys <- list.files('.',pattern=".xys",full.names=T)[1]
> seed <- new("NgsExpressionPDInfoPkgSeed", ndfFile=filename_ndf, xysFile=filename_xys,
author="Taejoon Kwon",email="email address",
biocViews="AnnotationData", genomebuild="Unknown",
url="http://www.marcottelab.org")
> makePdInfoPackage(seed, destDir = ".")
"""
I get the folling error in the seed <- new(...) line
"""
argument "posFile" is missing, with no default
"""
Can't seem to find any documentation on this parameter.
Anyone run into this ?
Chris
sessionInfo()
R version 2.7.2 (2008-08-25)
i686-pc-linux-gnu
locale:
C
attached base packages:
[1] splines tools stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] pdInfoBuilder_1.4.0 oligo_1.4.0 oligoClasses_1.2.0
[4] AnnotationDbi_1.2.2 preprocessCore_1.2.1 affxparser_1.12.2
[7] RSQLite_0.7-1 DBI_0.2-4 Biobase_2.0.1
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